Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2181 ATGTCAAACGTTTCAGGCGATGAAAGAAGCTTCTCCTCCGGGAACACGGGAGAAGTAGAAGTCCATCAAGAAGTCAACGACGATCAACAGCACCAACACAACACCACTTCAGCTCCCAATAACTCTGCTCCTTCCAACAGTAAGAAACCACCACCCAAGAAGAAGAGAAACCTTCCCGGAACACCAGATCCGAACGCTGATATTGTTGCGTTATCACCGACGGCACTCATGGCGACGAATAGATTCGTGTGCGAGATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTGCAGTTGCACAGGAGAGGGCACAACCTGCCATGGAAGCTGAGGCAAAGGTCGAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCCGAGCCCTCGTGTGTGCACCATAACCCAGCTCGAGCTCTGGGAGACCTCACCGGCATCAAGAAGCATTACAGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAAAGATACGCCGTCCAATCTGACTGGAAGGCCCACCAAAAAACCTGTGGCACCAGGGAATACAAATGTGACTGTGGCACCATTTTTTCCAGGAGAGATAGCTTCATCACGCACAGGGCTTTTTGCGACGCTTTAACTGAAGAAAACAATCGCGTGAACCAAGGATTAACCAGCAGCATGCAACCAAACATGCAAAATCATCTGACAGATCTGATGCCCGCCCTCTCCCCGGACCTCGGTCCAAGCCCATTCAAGCCTACGAGCATTGGGCCCATGTTCTCTACCACGTCAGGATCGCTCTTCTCTGGCCCAAGGCCCATCTCTCCCTCCTCCTCCTCGGCGCTCCAGCTAAGCCCCAACGCTTGCTCCACGGCTTTCAATTACTTACTGGATAGCAAAAACTTGGGCCCAATGATTTCTGGATTGGCCCAAATGTCTGCGACAGCTTTGCTACAGAAAGCAGCCCAAATGGGTGCCACCGCGAGCAACAGCATCAACTCTCCAATGATGCAGAAGAGCTTCGTCACTAGCATGGCTGGTCCTGATCATGTCTCTTCCATGAACAAACTACCATTTTCTGGTGCTGATCCTTCCTCCTATGATCATTTCCATCATCCTCATCGTGATCAACCCGACATGGCTGGGAATAGTGGCGGCGGACCATTCACCAATCAACTGTTTCACAAAAGCCCACAGGAAATTTCACAACTGTTTGATGCCACAAATGCTGCTGGATCTGCAATTACTGATATGGGCATGTTCAGCCAGATTTTCCTCGCAAGTGATCAGAACCCAGGATTGATGATGAAAAACAATGCGGAAGGAGAGAACAGCGGTGGTTCAAGTTTGATAATTCACGGGAGAGATGTGGGAGAAGGGAATCCGATGGGGCCAAATATGGCGACAGTACATGATTTCTTGGGTGTTGGGGAACCACAGCCACAAAGGTTGGAGATAGAAGCGATGAATCAGCAGGGGGTATCAGTTATGAATCAGTTTGAACACCATCTTCCTCGTGGGGATTCAGCTTTGGATAAATCCATTTGGGATGTTTGA 1548 0.5019 MSNVSGDERSFSSGNTGEVEVHQEVNDDQQHQHNTTSAPNNSAPSNSKKPPPKKKRNLPGTPDPNADIVALSPTALMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSSMQPNMQNHLTDLMPALSPDLGPSPFKPTSIGPMFSTTSGSLFSGPRPISPSSSSALQLSPNACSTAFNYLLDSKNLGPMISGLAQMSATALLQKAAQMGATASNSINSPMMQKSFVTSMAGPDHVSSMNKLPFSGADPSSYDHFHHPHRDQPDMAGNSGGGPFTNQLFHKSPQEISQLFDATNAAGSAITDMGMFSQIFLASDQNPGLMMKNNAEGENSGGSSLIIHGRDVGEGNPMGPNMATVHDFLGVGEPQPQRLEIEAMNQQGVSVMNQFEHHLPRGDSALDKSIWDV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2181 515 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
Prci1g2181 515 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Prci1g2181 515 SMART c2h2final6 82 104 IPR013087 -
Prci1g2181 515 SMART c2h2final6 158 178 IPR013087 -
Prci1g2181 515 SMART c2h2final6 123 153 IPR013087 -
Prci1g2181 515 MobiDBLite consensus disorder prediction 1 20 - -
Prci1g2181 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 493 IPR031140 -
Prci1g2181 515 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Prci1g2181 515 MobiDBLite consensus disorder prediction 30 48 - -
Prci1g2181 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Prci1g2181 515 FunFam protein indeterminate-domain 12-like 61 129 - -
Prci1g2181 515 Pfam Zinc finger, C2H2 type 82 104 IPR013087 -
Prci1g2181 515 Gene3D Classic Zinc Finger 60 128 - -
Prci1g2181 515 Gene3D Classic Zinc Finger 136 216 - -
Prci1g2181 515 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2181 Prci-Chr1 42663838 42666105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2181 53 326 IDZ Gene Family AT3G50700 54.517 9.12e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g2181 zf-C2H2 0.0052 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2181 1 42663838 42666105 Prci1g2181 1 42663838 42666105 ECH