Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2175 ATGTCTTCATCTGTTCCTCAAGATTCTGATTCCACCCCACAGATCTACTCCCGGAAAGACAAGTCACTTGGGTTACTTTGTTCTAACTTCTTCAAACTATATAATCGCGAAGGAATTGGGACGATTGGACTCGACGATGCTGCTTCCCGACTAGGAGTTCAGCGTCGCCGCATGTATGATGTAGTCAACATATTGGAGAGTGTTGGAATCGTGGCAAGAAAAGGGAAAAATCTATACCTATGGAAAGGTTTCAGCGAAATTCCTCGAGCTTTGAACGAGCTTAAGGAAGAGGGTATGAGAGAAAAATTTGATGCAGCGTACTGCAGGCCAGCTGAAGCATCGAAGGACAAAGAAACCAGTGGTTCTGAAACCAAAACCGATCCTTTGGCAATGACATTGCCCAAAACTGACGGCTGCAGAAGAGACAAATCTCTAGCACTTTTGACGGAGAATTTCATAAAGCTCTTCCTCTGTTCAGATGTTGAAATTATCTTGCTTGAAGATGCTGCAAAGATAATGCCGGGTGATGCCCAGAATTCAACTGCCTTGAGAACAAAAGTCAGACGTTTATATGACATAGCGAATGTTCTTTCATCCATTAATCTGATTGAGAAGACCAATCATCCCGAGTATAGGAAAACAGCATATAGGTGGTTGGGAGGAAAAGCCAGCAGAGAATCTAACGGCATCTTGGATCAAAGTGCATCCAGGAAAAGAGTGTTTGGAGCGGAAATTACAAATTACAGTTTAAAGAGAAATAAAACAGATCCTTCAATCGAGTTGCGGACCCATGAAAAGATTATGCCAGTGTATAAAAAACAAGATGAGTTGGAAAATGAATACAGATGTAAAACGTTGGAGCACCCTCCTAAATGCAGTTCAAAATCTATAGACTTTGGCCCATTTGCTCCCGTCAAGTTTAGAAGAGAAGATCCAGAGCACAGACATATGAGGCAGGTTCATGACATAGAAACGATGAGTTCTAAATATCGCCCTGAGTATCACAAACAAGTGACCCAATTGTAA 1026 0.4191 MSSSVPQDSDSTPQIYSRKDKSLGLLCSNFFKLYNREGIGTIGLDDAASRLGVQRRRMYDVVNILESVGIVARKGKNLYLWKGFSEIPRALNELKEEGMREKFDAAYCRPAEASKDKETSGSETKTDPLAMTLPKTDGCRRDKSLALLTENFIKLFLCSDVEIILLEDAAKIMPGDAQNSTALRTKVRRLYDIANVLSSINLIEKTNHPEYRKTAYRWLGGKASRESNGILDQSASRKRVFGAEITNYSLKRNKTDPSIELRTHEKIMPVYKKQDELENEYRCKTLEHPPKCSSKSIDFGPFAPVKFRREDPEHRHMRQVHDIETMSSKYRPEYHKQVTQL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2175 341 MobiDBLite consensus disorder prediction 114 133 - -
Prci1g2175 341 SUPERFAMILY "Winged helix" DNA-binding domain 142 220 IPR036390 -
Prci1g2175 341 PANTHER TRANSCRIPTION FACTOR E2F 10 334 IPR015633 GO:0000978|GO:0006357
Prci1g2175 341 Pfam E2F/DP family winged-helix DNA-binding domain 142 220 IPR003316 GO:0005667|GO:0006355
Prci1g2175 341 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Prci1g2175 341 Gene3D - 134 222 IPR036388 -
Prci1g2175 341 Gene3D - 12 85 IPR036388 -
Prci1g2175 341 FunFam E2F transcription factor 8 13 85 - -
Prci1g2175 341 SMART E2F_TDP_2 140 220 IPR003316 GO:0005667|GO:0006355
Prci1g2175 341 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Prci1g2175 341 FunFam E2F transcription factor-like E2FE 135 222 - -
Prci1g2175 341 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2175 Prci-Chr1 42586238 42589645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2175 1 341 E2F-DP Transcription Factor Family AT3G01330 48.295 1.03e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci1g2175 E2F_TDP 6.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2175 - K09391 lang:109346387 393.66