Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2171 ATGGATGGGGATCAGGAAACAAGCGTGGCTGCATCATTGGCTCCTAAGAAGAAGAAGAATGGGTCCATTAGATCCATTTTCATGCACGCCGATAGATTAGATTGCTTCCTCATGGTCCTAGGCCTCATTGGGTCCCTGGGCGACGGTTCCACCACCCCTCTCGTCCTCCTTGTCAGTGGCCGCTTGATGAACAATATCGGCTCTGGTCCTACCCTCGATCCCAATGCTTTCATCCATCCCATTAATAAGAATTCGGTGGCCTTGCTATATTTAGCTGCTGGCTCCTTTTTCAGTTGCTTCCTCGAGGGGTACTGCTGGACCAGAACAGGAGAAAGACAAGCTGCCAGAATGAGAGCGAGGTATTTGAAAGCGGTGCTCAGGCAGGATGTGGCCTACTTTGATCTGCACGTGACAAGCACGTCGGAGGTGATCACCAGCGTCTCCAACGACAGTCTTGTAATTCAAGATGCTATTGCTGAGAAGGTACCAAACTTCTTGATGAACGTGTTCATGTTCATCGGGAGCTACATAGCTGCCTTTGCAATGTTGTGGAGGCTGGCTATTGTGGGGTTCCCATTCGTGGTGTTGCTTGTGATCCCTGGTTTACTCTACGGTAGAACTCTAATGGGGTTGGCGAGAAAGATCAGAGAAGAGTATAATCAGGCTGGTACAATAGCAGAGCAGGCAATATCTTCCATAAGAACTGTGTATTCCTTCGTAGGAGAAAGCAAGACCATAGCCGCTTTCTCTGAAGCTTTACAGGGCTCTGTTAAACTGGGGCTCAAGCAGGGCTTGGCTAAAGGCTTAGCCGTCGGAAGCAACGGCATCGTCTTCGCTATCTGGTCCTTCATGTCCTATTACGGCAGCACCCTCGTCATGTACCACGGCGCTCAAGGCGGTATGGTTTTCGCCGTCGGAGCTGCCATCGCCGTCGGTGGCCTATCTCTAGGGGCCGCTTTATCGAACATGAAGTACTTCTCGGATGCGAGTGCTGCAGGGGAGCGCATAATGGAAGTGATAAAAAGAGTTCCGAAGATTGATTCGGACAGCATGAGTGGAGAGATTCTGGAGAGCGTTTCAGGGGAAGTAGAATTCGATCACGTACAGTTCGCGTACCCATGCCGACCAGCAAGCATAATCCTGAACGATTTCTGCTTGAAAATTCCAGCAGGGAAGACGATGGCTTTAGTGGGTGGGAGTGGATCAGGAAAATCAACAGTAATATCACTTTTGCAGAGATTTTATGATCCACTTGTGGGAGAGATAAGGCTTGATGGTGTGGCCATTCACAAGATGCAGCTCAAGTGGCTGAGGTCACAGATGGGTCTGGTCAGCCAAGAGCCTGCTCTGTTCGCAACCAGCATCAAGGAGAACATTTTCTTTGGAAAGGAGGACGCTTCCATGGAAGAGCTCATTCAAGCAGCCAAAGCTTCCAATGCTCATAATTTCATTTCACACCTTCCACTGGGGTACGATACTCAGGTTGGCGAAAGAGGAGTTCAAATGTCAGGGGGGCAAAAGCAAAGGATCGCCATTGCACGAGCAATAATAAAGAAACCAAGACTGCTTTTGCTAGATGAAGCAACCAGCGCGTTAGATTCTGAATCCGAGCGAGTAGTTCAAGAAGCTCTGGACAAAGCAGCCGTGGGTCGAACCACAATCATCATTGCCCACCGTTTATCCACCATCCGAAACGCCGATGTCATTGCCGTCGTCCAGAACGGAAGGATCATGGAGATGGGCTCGCATGACGAGCTCATCCAAAACGACGACGGACTTTACACCTCTTTGGTTCGTCTCCAACAGACGGAACAATTCAAAACCCAACAAGAAGACATCGTCTCCGCGCCGTCGTCTATATCAAACAGAGACATGAACAACACAAGCAGCCGCAGGCTTTCCCTGGTGAGTCGTTCTAGCTCTTCCAATTCAATGGCGCGAAATCCAGCTTTAGTTGCTGATGAAGACGGTGACCATCGCGTTACAGAAGATCAGAAATTCCCAGTTCCTTCGTTTCGGAGATTGTTGGCTCTTAATCTCCCAGAATGGAAGCAGGCAACTATGGGGTGTATAAGTGCTGTTCTCTTTGGTGCGGTTCAGCCACTGTATGCATTCGCAATGGGGTCTATGATATCAGTGTACTTTTTGACGGATCACGATGAGATCAAAAGGAAGACTAGGATTTATGTTCTCTGTTTTTTGGGGTTGGCTATCTTCTCTTTGCTTGTTAATATAAGTCAGCATTATTACTTTGCTTACATGGGCGAGTACCTGACCAAAAGGGTTAGAGAAAGAATGCTCTCCAAGATTCTCACATTTGAAGTCGGATGGTTCGATCAGGACGAAAATTCCAGTGGTGCTATTTGCTCTCGACTTGCCAAAGATGCCAATGTGGTGAGGTCTTTGGTGGGTGATAGAACGGCTCTACTGGTACAAACTTGTTCGGCAGTGACAATAGCCTGCACAATGGGGCTGGTCATTGCATGGAGGCTGGCCATTGTGATGATAGCCATTCAGCCTCTTATCATTGCTTGCTATTACACAAGGCGGGTCCTTCTCAAGAGCATGTCTAGCAGAGCCATCAAAGCCCAAGAGGAAAGCAGCAAGCTAGCTGCCGAAGCTGTTTCGAATATTCGAACTGTCACCGCCTTCTCTTCACAAGATCGCATATTGAAAATGCTCCAAAAGGCTCAAGAAGGCCCGAGCCAGGAGAGCATTCGTCAATCCTGGTATGCAGGTATTGGACTCGGATGTTCCCAAGGCCTCATGACTTGTACTTGGGCTTTAGACTTTTGGTACGGTGGCAAGCTTATCTCCCAAGGTTACATCACTGGCAAAGCACTGCTCGAGACCTTCATGGTTCTGGTCAGCACAGGACGAGTTATCGCTGATGCTGGAAGTATGACCTCGGACCTCGCCAAGGGAGCCGACGCAGTGGGCTCTGTTTTTGCAGTTCTAGACAAATACACTCAAATTGAGCCACAAGACCCAGATGGGTACAAGCCGGACAAGATAACAGGCCAGATTGAACTCCGCGATGTTCATTTTGCTTACCCAGCTAGGCCCGATGTGATGATCTTCGAAGGATTTTCACTCAAGATAGAGGCTGGGAAATCAACAGCATTAGTGGGTCAAAGTGGGTGCGGCAAATCAACCATTATAGGCTTAATAGAGAGGTTCTACGACCCACAGAAAGGAACAGTGACCATCGAAGGTAAAGACATGAGGTCGTACCAACTCAGAGCACTGAGGAAATACATAGCATTGGTGAGTCAAGAGCCGACGTTATTCAGTGGGACCATAAGAGAGAACATTGCATATGGAGCGTCGGATAAGGTAGGCGAAGCGGAGATCATAGAAGCAGCGAGAGCAGCGAATGCCCATGATTTCATAGGAAGCCTGAAGGATGGATACGACACGTCGTGTGGGGACAGAGGGGTGCAGCTATCGGGAGGGCAGAAGCAGAGGATAGCGATCGCGAGGGCGATATTGAAGAACCCGACGGTGTTGCTGTTGGACGAGGCGACGAGCGCGCTGGACAGCCAATCGGAGAAGGTGGTGCAAGAAGCGCTGGAGAGGGTGATGGTTGGGAGGACCAGCGTGGTGGTGGCCCACAGGTTGAGCACCATACAGAGCTGTCATCTCATTGCTGTGTTGGATAAAGGGAAAGTGGTGGAGAAAGGGACCCACTCATCTTTGTTGGCCAAGGGACCCACCGGAGTCTATCACTCTTTGGTCACTCTTCAGAGAACGCCGCCGTCGAACGCCGCCGAGGGTCGAGACCCAATCCTGCATTGA 3798 0.4974 MDGDQETSVAASLAPKKKKNGSIRSIFMHADRLDCFLMVLGLIGSLGDGSTTPLVLLVSGRLMNNIGSGPTLDPNAFIHPINKNSVALLYLAAGSFFSCFLEGYCWTRTGERQAARMRARYLKAVLRQDVAYFDLHVTSTSEVITSVSNDSLVIQDAIAEKVPNFLMNVFMFIGSYIAAFAMLWRLAIVGFPFVVLLVIPGLLYGRTLMGLARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTIAAFSEALQGSVKLGLKQGLAKGLAVGSNGIVFAIWSFMSYYGSTLVMYHGAQGGMVFAVGAAIAVGGLSLGAALSNMKYFSDASAAGERIMEVIKRVPKIDSDSMSGEILESVSGEVEFDHVQFAYPCRPASIILNDFCLKIPAGKTMALVGGSGSGKSTVISLLQRFYDPLVGEIRLDGVAIHKMQLKWLRSQMGLVSQEPALFATSIKENIFFGKEDASMEELIQAAKASNAHNFISHLPLGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRLLLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQNGRIMEMGSHDELIQNDDGLYTSLVRLQQTEQFKTQQEDIVSAPSSISNRDMNNTSSRRLSLVSRSSSSNSMARNPALVADEDGDHRVTEDQKFPVPSFRRLLALNLPEWKQATMGCISAVLFGAVQPLYAFAMGSMISVYFLTDHDEIKRKTRIYVLCFLGLAIFSLLVNISQHYYFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTCSAVTIACTMGLVIAWRLAIVMIAIQPLIIACYYTRRVLLKSMSSRAIKAQEESSKLAAEAVSNIRTVTAFSSQDRILKMLQKAQEGPSQESIRQSWYAGIGLGCSQGLMTCTWALDFWYGGKLISQGYITGKALLETFMVLVSTGRVIADAGSMTSDLAKGADAVGSVFAVLDKYTQIEPQDPDGYKPDKITGQIELRDVHFAYPARPDVMIFEGFSLKIEAGKSTALVGQSGCGKSTIIGLIERFYDPQKGTVTIEGKDMRSYQLRALRKYIALVSQEPTLFSGTIRENIAYGASDKVGEAEIIEAARAANAHDFIGSLKDGYDTSCGDRGVQLSGGQKQRIAIARAILKNPTVLLLDEATSALDSQSEKVVQEALERVMVGRTSVVVAHRLSTIQSCHLIAVLDKGKVVEKGTHSSLLAKGPTGVYHSLVTLQRTPPSNAAEGRDPILH 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2171 1265 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524|GO:0016887
Prci1g2171 1265 SMART AAA_5 1036 1229 IPR003593 GO:0016887
Prci1g2171 1265 SMART AAA_5 390 576 IPR003593 GO:0016887
Prci1g2171 1265 FunFam ABC transporter B family member 1 25 362 - -
Prci1g2171 1265 Pfam ABC transporter transmembrane region 39 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g2171 1265 Pfam ABC transporter transmembrane region 688 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g2171 1265 PANTHER ABC TRANSPORTER B FAMILY 15 744 IPR039421 -
Prci1g2171 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 601 IPR027417 -
Prci1g2171 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 336 - -
Prci1g2171 1265 CDD ABC_MTABC3_MDL1_MDL2 1009 1249 - -
Prci1g2171 1265 SUPERFAMILY ABC transporter transmembrane region 32 347 IPR036640 GO:0005524|GO:0016020
Prci1g2171 1265 Gene3D - 361 619 IPR027417 -
Prci1g2171 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g2171 1265 FunFam ABC transporter B family member 4 999 1255 - -
Prci1g2171 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1249 IPR027417 -
Prci1g2171 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Prci1g2171 1265 FunFam Putative ABC transporter B family member 8 652 997 - -
Prci1g2171 1265 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Prci1g2171 1265 Gene3D ABC transporter type 1, transmembrane domain 87 975 IPR036640 GO:0005524|GO:0016020
Prci1g2171 1265 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Prci1g2171 1265 Gene3D - 999 1256 IPR027417 -
Prci1g2171 1265 SUPERFAMILY ABC transporter transmembrane region 668 988 IPR036640 GO:0005524|GO:0016020
Prci1g2171 1265 MobiDBLite consensus disorder prediction 610 629 - -
Prci1g2171 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1246 IPR003439 GO:0005524
Prci1g2171 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Prci1g2171 1265 Pfam ABC transporter 1029 1177 IPR003439 GO:0005524
Prci1g2171 1265 FunFam ABC transporter B family member 4 353 610 - -
Prci1g2171 1265 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Prci1g2171 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2171 Prci-Chr1 42556701 42563196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2171 688 1256 Calmodulin-binding Proteins AT2G36910 38.581 5.20e-115 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2171 K05658 - cave:132181353 1930.22