Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2156 ATGGGAAGGCCACCTTGCTGTGATAAATCCAATGTCAAAAGGGGCCTTTGGACTCCCGAGGAGGATGCTAAACTGCTCGCTTATGTCTCCAATCATGGCACTGGCAATTGGACTCTGGTTCCTAAGAAAGCTGGGTTAAACAGATGTGGTAAGAGCTGTAGGCTCAGGTGGACTAACTATCTGAGACCTGACCTCAAGCATCATAGCTTCACACCCCAAGAGGAAGAGCTTATTATTAACCTTCATCAAGCTATAGGAAGCAGGTGGTCTTTGATTGCGAGGAGACTCCCTGGGAGAACAGACAATGATGTGAAGAACCACTGGAACACAAAGCTGAGGAAGAAGCTTATGAAGATGGGAATTGACCCGGTGACCCACAAGCCTGTGTCTCAAGTCCTTTCTGACTTGGGAACTATTAGCTGCCTCTCAACTGTAACAACTGAAACACGACCCGCAAGCACCAATCTAATGGTCTCTAATCAGCTTGATCAAGAGGTGCAATCCCAATTCATTAACCCAGAGAATGACGTCCAGTCACACCAGAACGAAGCTGCGTCTTCATGTTCCTCGTCATCGTCATCATCTTCCTCTAGTATCACACGACTAAGCTCACCTCGCTACGTCATGGCTGCTGCTGCTGTTCCTGCCCCCTGTTCATCGTTTGATTGGAGCGAGTTTCTTCTGAGTGACCCGTTCATGTGCACCGAGTTTCAACAGCTGAATCAGTACGACATGAATGGGGTTTCGTCGTCGTTGAGTCCCTCGGTTATAATGCAGAACCAAATTCAATTTTCGAATAATGCAGGTGATGAGGGTTCAGGAGTGGTTGTGGCTGATGAGGCGAGCGTGAAGCGTCAAGTCTTTGATAAGCAATATTGTGAAGGGACTGCTTCATCATCTTCATTCGTGGATGCCATTTTGAACAGAGATAGTGAGATTAGGGCAGCATTTCCTCAACTGCTAGATGCATCCACTGATTACTAG 984 0.4726 MGRPPCCDKSNVKRGLWTPEEDAKLLAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTPQEEELIINLHQAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGTISCLSTVTTETRPASTNLMVSNQLDQEVQSQFINPENDVQSHQNEAASSCSSSSSSSSSSITRLSSPRYVMAAAAVPAPCSSFDWSEFLLSDPFMCTEFQQLNQYDMNGVSSSLSPSVIMQNQIQFSNNAGDEGSGVVVADEASVKRQVFDKQYCEGTASSSSFVDAILNRDSEIRAAFPQLLDASTDY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2156 327 CDD SANT 69 112 IPR001005 -
Prci1g2156 327 SMART sant 13 63 IPR001005 -
Prci1g2156 327 SMART sant 66 114 IPR001005 -
Prci1g2156 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci1g2156 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci1g2156 327 FunFam transcription factor MYB80 69 129 - -
Prci1g2156 327 CDD SANT 17 61 IPR001005 -
Prci1g2156 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci1g2156 327 Gene3D - 68 131 - -
Prci1g2156 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci1g2156 327 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Prci1g2156 327 Gene3D - 7 67 - -
Prci1g2156 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci1g2156 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Prci1g2156 327 MobiDBLite consensus disorder prediction 176 198 - -
Prci1g2156 327 FunFam Transcription factor RAX3 7 67 - -
Prci1g2156 327 PANTHER F14D16.11-RELATED 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2156 Prci-Chr1 42387986 42390106 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2156 1 322 MYB Transcription Factor Family AT3G28470 47.941 4.90e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g2156 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2156 K09422 - qsa:O6P43_004543 364.385