Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2153 ATGCTAAGAGTGCTGAATGGGAAGGCCACCTGCTGTGATAAATCCAATGTCAAAAGGGGCCTTTGGACTCCCGAGGAGGATGCTAAACTGCTCGCTTATGTCTCCAATCATGGCACTGGCAATTGGACTCTGGTTCCTAAGAAAGCTGGGTTAAACAGATGTGGTAAGAGCTGTAGGCTCAGGTGGACTAACTATCTGAGACCTGACCTCAAGCATCATAGCTTCACACCCCAAGAGGAAGAGCTTATTATTAACCTTCATCAAGCTATAGGAAGCAGGTGGTCTTTGATTGCGAGGAGACTCCCTGGGAGAACAGACAATGATGTGAAGAACCACTGGAACACAAAGCTGAGGAAGAAGCTTTTGAAGATGGGAATTGACCCGGTGACCCACAAGCCTGTGTCTCAAGTCCTTTCTGACTTGGGAACTATTAGCTGCCTCTCAACTGTAACAACTGAAACACGACCCGCAAGCACCAATCTAATGGTCTCTAATCAGCTTGATCAAGAGGTGCAATCCCAATTCATTAACCCAGAGAATGACGTCCAGTCACACCAGAACGAAGCTGCGTCTTCATGTTCCTCGTCATCGTCATCATCTTCCTCTAGTATCACACGACTAAGCTCACCTCGCTACGTCATGGCTGCTGCTGCTGTTCCTGCCCCCTGTTCATCGTTTGATTGGAGCGAGTTTCTTCTGAGTGACCCGTTCATGTGCACCGAGTTTCAACAGCTGAATCAGTACGACATGAATGGGGTTTCGTCGTCGTTGAGTCCCTCGGTTATAATGCAGAACCAAATTCAATTTTCGAATAATGCAGGTGATGAGGGTTCAGGAGTGGTTGTGGCTGATGAGGCGAGCGTGAAGCGTCAAGTCTTTGATAAGCAATATTGTGAAGGGACTGCTTCATCATCTTCATTCGTGGATGCCATTTTGAACAGAGATAGTGAGATTAGGGCAGCATTTCCTCAATTGCTAGATGCATCCACTGATTACTAG 999 0.4715 MLRVLNGKATCCDKSNVKRGLWTPEEDAKLLAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTPQEEELIINLHQAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLLKMGIDPVTHKPVSQVLSDLGTISCLSTVTTETRPASTNLMVSNQLDQEVQSQFINPENDVQSHQNEAASSCSSSSSSSSSSITRLSSPRYVMAAAAVPAPCSSFDWSEFLLSDPFMCTEFQQLNQYDMNGVSSSLSPSVIMQNQIQFSNNAGDEGSGVVVADEASVKRQVFDKQYCEGTASSSSFVDAILNRDSEIRAAFPQLLDASTDY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2153 332 FunFam Transcription factor RAX3 12 72 - -
Prci1g2153 332 Pfam Myb-like DNA-binding domain 74 115 IPR001005 -
Prci1g2153 332 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Prci1g2153 332 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Prci1g2153 332 CDD SANT 22 66 IPR001005 -
Prci1g2153 332 Gene3D - 73 136 - -
Prci1g2153 332 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Prci1g2153 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Prci1g2153 332 Gene3D - 11 72 - -
Prci1g2153 332 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Prci1g2153 332 PANTHER F14D16.11-RELATED 7 332 - -
Prci1g2153 332 MobiDBLite consensus disorder prediction 181 203 - -
Prci1g2153 332 FunFam transcription factor MYB80 74 134 - -
Prci1g2153 332 CDD SANT 74 117 IPR001005 -
Prci1g2153 332 SMART sant 71 119 IPR001005 -
Prci1g2153 332 SMART sant 18 68 IPR001005 -
Prci1g2153 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2153 Prci-Chr1 42367676 42370068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2153 7 327 MYB Transcription Factor Family AT3G28470 46.608 3.67e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g2153 Myb_DNA-binding 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2153 K09422 - qsa:O6P43_004543 355.14