Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2130 ATGGGATTTGGGAATAATGCAATTCAGGCTGGTAGTTTGGACGTGGGCAAGTCGAATGGAAGGAAGAAGAAAGATGGCGCAGAGAAGCAGAGTGGATGTTGGGCTAAATTCAGTTGCATCGGAAGCTGCATACCTTCTAGATCAAAGATTGATAACTCCTTAAGTGGTGGTCCAAGCGCCCATAATGTGGAAAACAGATGTACAAATGAAAATACCAAAGATCGAACAGTTGCTCCTCCAGAGTCATCCACTACTACTACTAGTAATGCGGGAAGCATACCCTCAACTCCAATATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTCACATTCAATGAACTTAAATTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAAGAGAATGGAACTGCACCTGTCAAACCAGGTACTGGGCTTACAGTTGCAGTGAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGCTGAACTACCTCGGTGATCTTGTCCACACTAATCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAGTTTATGCCCCGAGGAAGTTTAGAGAACCATCTCTTTAGAAGGCCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGAGCTGCAAAAGGTCTTGCCTTTCTTCATGAAGAAGCTCGGAGGCCTGTAATATATCGAGATTTCAAGACATCTAATATCCTATTAGATGCTGAATATAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAGGTTGGAAAGACCCATGTATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTTTATAGTTTTGGGGTAGTGCTCCTTGAAATGCTTACTGGTCGACGAGCAATTGATAAAAATAGACCAAATGGGGAGCACAACCTGGTGGAATGGGCAAGACCAGCACTTGGAGACCGGAGGATGTTCTACCGAATAATCGATCCTCGTCTTGAAGGTCACTTCTCGATTAAAGGTTCACAGAAAGCCGCCCAACTTGCTGCTCAATGCCTTAGCCGTGATCCAAAATCTAGACCCGTGATGAGTGAAGTTGTTCAGGTTCTTAAGCCTTTGCCAAACCTTAAGGATATGGCCATTTCATCTCAGCACTTCCAGTTCACACGAGTAGATCGCACTATGTCCATGCCAAATCCCAAAAATGGTTCAAAAACACAGCTAACATCTGTATCAAGGAAAGGTCAACCTGTAAGGATCTTGTCGAGTCCAAACGGTCCACGTGGTTCTCCATATCATTATTCCAAGTCACCAAAACCTAACGGGTGA 1431 0.4347 MGFGNNAIQAGSLDVGKSNGRKKKDGAEKQSGCWAKFSCIGSCIPSRSKIDNSLSGGPSAHNVENRCTNENTKDRTVAPPESSTTTTSNAGSIPSTPIFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNYLGDLVHTNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEARRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEVGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAIDKNRPNGEHNLVEWARPALGDRRMFYRIIDPRLEGHFSIKGSQKAAQLAAQCLSRDPKSRPVMSEVVQVLKPLPNLKDMAISSQHFQFTRVDRTMSMPNPKNGSKTQLTSVSRKGQPVRILSSPNGPRGSPYHYSKSPKPNG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2130 476 PANTHER OS01G0588500 PROTEIN-RELATED 80 407 - -
Prci1g2130 476 ProSiteProfiles Protein kinase domain profile. 124 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2130 476 ProSitePatterns Protein kinases ATP-binding region signature. 130 162 IPR017441 GO:0005524
Prci1g2130 476 FunFam Probable serine/threonine-protein kinase PBL8 210 424 - -
Prci1g2130 476 Gene3D Transferase(Phosphotransferase) domain 1 210 428 - -
Prci1g2130 476 SUPERFAMILY Protein kinase-like (PK-like) 105 404 IPR011009 -
Prci1g2130 476 FunFam Serine/threonine-protein kinase BIK1 92 209 - -
Prci1g2130 476 MobiDBLite consensus disorder prediction 51 95 - -
Prci1g2130 476 Gene3D Phosphorylase Kinase; domain 1 99 209 - -
Prci1g2130 476 MobiDBLite consensus disorder prediction 1 27 - -
Prci1g2130 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Prci1g2130 476 MobiDBLite consensus disorder prediction 428 476 - -
Prci1g2130 476 Pfam Protein kinase domain 127 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g2130 476 CDD STKc_IRAK 130 407 - -
Prci1g2130 476 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2130 Prci-Chr1 42178972 42183710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2130 110 420 Glycoside Hydrolase AT3G07070 55.414 3.58e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci1g2130 Pkinase 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2130 - - gmx:100305393 807.749