Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2122 ATGGCAGAAGGTGTTAATAAGGCCACCCTCTTCTTCTTCTTGGCCATTCTCGCCATTTCTATTCCATGCCTACAAGCCAACATTGCCGACTACGATGATTACATCATTAAACGATCTGAGGAAGCCCGTAGAGCCGCCCTTCAAGCCTACGAGCCCGACCCTTTTAATGTCACCTCTGAACTCAATCTCCACGTTCACTTAGCGACACAGGAAAGCAACAGGAGGGGACTGAAAAGGGGCCAGTACGCAGGGCCATGCATGGCCACAAATCCTATTGACAGGTGCTGGCGGTGCAGGCCTGATTGGGCCACAGATCGCATGAGGTTAGCTAGATGTGTGAAGGGTTTTGGCCGGAAGACCACCGGAGGACTAGGCGGCCGGATATATGTGGTCACGGACCCCTCCGACAACGACTTGGTGAACCCGAGGCCCGGAACATTACGGTTCGGAGCGGTCCAGGACGAACCCTTGTGGATCATCTTCGAACGCGACATGACCATCGTTCTGCAACAGGAACTGCTGGTTAACTCGCACAAGACCATCGATGGTCGTGGAGCCAACGTCCAGATCACCAAAGGCGCTAGCATATCCTTGTTCATGGTCACCAACGTCATCATCCACAATATTCGAATCCACAACGTCGTGCCCAAGCAGGGCGGTCTCATTAGGGACTCCGCTCACCACGTCGGTACGAGAACCAGGAGCGACGGAGACGCCATCTCCATCTTCGGCTCCTCCAACATCTGGATCGATCATGTTTCAATGTCCAGAGCCGCCGATGGCCTCGTCGACGTCATCCAAGGCTCAACCGGCGTCACCATCTCCAACTGCCACATGACCAATCACAACGACGTGATGCTGTTAGGAGCAAGCGATGTGTTCACAGGGGACAAGATGATGCAGGTTACGGTGGCGTTCAACCATTTCGGGCAGGGACTGATACAGAGGATGCCGAGGGCGAGATGGGGATTCGTGCACGTACTGAACAACGACTACACTCACTGGCTCATGTACGCCATAGGTGGGAGCTCCGCCCCGACGATACTGAGCCAGGGAAACCGATTCATTGCTCCGAACGACAACGCGGCGAAGGAGATAACGCACAGGGAGTACGCGACGCCGCAGCAATATAGCCAGTGGAGGTGGACGTCGGAAATGGACTTGTTCATGAACGGAGCGACGTTTCTTCAGTCAGGAGCGCACATATTGGCTCAGTCATACGGAAAAGACGCGATGATCAAACCCAGAGATGGATCGTTTGTGACGAGGCTGACCAGGTTTAGTGGTGCCCTCAATTGCCGAGTGGGAAAGCCTTGCTAG 1320 0.5455 MAEGVNKATLFFFLAILAISIPCLQANIADYDDYIIKRSEEARRAALQAYEPDPFNVTSELNLHVHLATQESNRRGLKRGQYAGPCMATNPIDRCWRCRPDWATDRMRLARCVKGFGRKTTGGLGGRIYVVTDPSDNDLVNPRPGTLRFGAVQDEPLWIIFERDMTIVLQQELLVNSHKTIDGRGANVQITKGASISLFMVTNVIIHNIRIHNVVPKQGGLIRDSAHHVGTRTRSDGDAISIFGSSNIWIDHVSMSRAADGLVDVIQGSTGVTISNCHMTNHNDVMLLGASDVFTGDKMMQVTVAFNHFGQGLIQRMPRARWGFVHVLNNDYTHWLMYAIGGSSAPTILSQGNRFIAPNDNAAKEITHREYATPQQYSQWRWTSEMDLFMNGATFLQSGAHILAQSYGKDAMIKPRDGSFVTRLTRFSGALNCRVGKPC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2122 439 Gene3D - 89 432 IPR012334 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Prci1g2122 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Prci1g2122 439 Pfam Pectate lyase, N terminus 27 77 IPR007524 GO:0030570
Prci1g2122 439 PANTHER PECTATE LYASE 18-RELATED 42 437 IPR045032 GO:0030570
Prci1g2122 439 SUPERFAMILY Pectin lyase-like 90 430 IPR011050 -
Prci1g2122 439 SMART amb_all 164 361 IPR002022 -
Prci1g2122 439 Pfam Pectate lyase 172 355 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2122 Prci-Chr1 42109442 42111294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2122 3 439 Polysaccharide Lyase AT5G15110 52.542 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2122 K01728 - gmx:100780236 607.446