Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2113 ATGGAACAAGTGAGGGCACTGGAAAAGAGCTTCGAGTTAGGGAACAAGCTGGAGCCTGAACGCAAAATGCAGCTGGCCAAGGCTCTAGGCCTTCAGCCGAGGCAGATCGCTATTTGGTTCCAGAATAGGAGGGCCAGATGGAAAACCAAACAGCTCGAGAAGGAATATGAAGCTCTCAAGAAGTTTGAAGCTCTTAAGGCTGACAACGATGCTCTTAAGGCCCATAACCACAAATTACACGCCGAGTTACAAGCTCTAAAGGGAACGGATTGCCGTGAAGAAGGCGGAACCAGGAACCTTAAGAAAGAACCTGAGGTTTGTTGGAGCAATGGGAGTACTGAGAATAGCTCGGACATTAACTTGGATCTCTCAAGATCACAATTTATAAACCGTACTGTAACTTCAGTACAGAATGGGAAAAACCTTCTTCCCTCTAATGCCCTTAAGCCGACCAGCATAACCCAGCTCCTCCAGTGCTCATCGAGATCATCAGAACTTCAAGATGAAAGCTTCTCCAACATGTTTAACGGCGTGGAAGAGCACCAGAATATCTGGCCCTGGCCGGAGCACCACCAGTTTCATTGA 585 0.4769 MEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKXFEALKADNDALKAHNHKLHAELQALKGTDCREEGGTRNLKKEPEVCWSNGSTENSSDINLDLSRSQFINRTVTSVQNGKNLLPSNALKPTSITQLLQCSSRSSELQDESFSNMFNGVEEHQNIWPWPEHHQFH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2113 195 Pfam Homeodomain 2 48 IPR001356 GO:0003677
Prci1g2113 195 ProSitePatterns 'Homeobox' domain signature. 25 48 IPR017970 GO:0000981|GO:0006355
Prci1g2113 195 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Prci1g2113 195 Coils Coil 42 61 - -
Prci1g2113 195 FunFam homeobox-leucine zipper protein ATHB-6-like 1 44 - -
Prci1g2113 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 187 IPR045224 GO:0003700
Prci1g2113 195 PRINTS Lambda-repressor HTH signature 21 30 IPR000047 GO:0003677
Prci1g2113 195 PRINTS Lambda-repressor HTH signature 30 46 IPR000047 GO:0003677
Prci1g2113 195 Gene3D - 1 48 - -
Prci1g2113 195 CDD homeodomain 1 51 IPR001356 GO:0003677
Prci1g2113 195 ProSiteProfiles 'Homeobox' domain profile. 1 50 IPR001356 GO:0003677
Prci1g2113 195 Pfam Homeobox associated leucine zipper 50 89 IPR003106 GO:0006355|GO:0043565
Prci1g2113 195 Coils Coil 63 76 - -
Prci1g2113 195 SMART HOX_1 1 54 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2113 Prci-Chr1 41955081 41957223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2113 1 190 Homeobox Transcription Factor Family AT3G01220 53.500 1.14e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g2113 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2113 K09338 - gmx:100790803 286.189