Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2111 ATGTCTAGCAGAAGGTCCAGGCAGCAATCGTCATCAGGGTCTTCACCCATCTCCGATGACCAAATCATCCAGCTTGTCTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCGATACTCGTCGCTCTAACAAGGTATCTGCTTCAAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTAAACAGAGAAGTGGACGACTTGAGCCAGCGACTCTCTCAGTTGTTGGCCACAATCGATGCTGATAGTGCCGAGGCTGCCATCATTAGGAGCCTCATTAATCCGTAA 288 0.4896 MSSRRSRQQSSSGSSPISDDQIIQLVSKLRQLVPEIRDTRRSNKVSASKVLQETCNYIRSLNREVDDLSQRLSQLLATIDADSAEAAIIRSLINP 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2111 95 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Prci1g2111 95 FunFam Transcription factor ILI6 5 90 - -
Prci1g2111 95 Gene3D - 19 90 IPR036638 GO:0046983
Prci1g2111 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Prci1g2111 95 Coils Coil 51 78 - -
Prci1g2111 95 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Prci1g2111 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 80 IPR036638 GO:0046983
Prci1g2111 95 CDD bHLH_AtPRE_like 17 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2111 Prci-Chr1 41930044 41931908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2111 17 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 74.026 2.59e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g2111 HLH 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2111 - - gmx:100794486 131.339