Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2105 ATGGAGGAGACGACTGAGATGGATAAGATGAACGACGATACCATGTTGCCCGGTTTTAGGTTTCACCCCACGGACGAGGAGCTTGTTGATTTTTACCTCAGAAGAAAGATTCAGCAGAAATCTCTCCCTATTGAGCTTATCAAGCAAGTGGATATTTACAAATACGATCCTTGGGATCTTCCAAAGCTTGTGGCGAGCACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGATCGGAAATACAGAAACAGCCCGCGACCAAATAGAGTGACGAGAGCTGGATTTTGGAAAGCCACCGGAACAGACAGGCCTATATACTCGTCAGAAGGCAAGTGCATCGGCTTGAAGAAATCTCTCGTGTTCTACAGAGGCAGAGCCGCCAAAGGCGTCAAGACTGATTGGATGATGCATGAGTTTCGCCTCCCTTCTTCCCCAGATTCACCTCCTCCGCCCAAGAAGCCCTTTGACAAAACCCTCTCTCCACAGGCACGTATTCTCCTCAACTTCTTCGTATTTTTCTCTAAACCATGCTTATCGATGCGTGTCTTTCTCCAGGATTCATGGGCGATTTGTAGGATATTCAAGAAAAACTCCATGTCCATGGCACAGAAAGCTCTGTCTCACACATGGATGGCTCAGTTGCCGGAGAGCATGGTGTCTGATATGCTCGCTCAGAGTGCAAGCCGCAATCACTTGATTTCAGAGAACATGTCTTGCACGACAGAAATAGGATCAGCATCAGGCATGAGGCACTACGGAGGAGGAAACAGGCAAGAATTATACGAGCAGGTATCTAGTGCCAATTACCCGGCTTCAGATTTTCTTATCAATGCTAGCAACACAGTGGTCTCCAACAAGGCCGCCCAAATCCCGGTCTCGAACGCCGACGTAGCGGACACCTTTATGTTCTCCACGTTCGAATCATCAGGCCCTTGTGCCTATATAGGCTTCGAAGGGCCAAACAATATTATGTTTAGCGGCGTCTCAGTAGTGAGCACGCCTCATCACGACGTACAAGGACTAAGCATGACTACCTCAACAGTAGCAGAAGCCATTGGGTTTCCCTTCAGCTTGCCTCCAGTTTCGAACGATGCTTGGAAGCCTATTCTGCCATGGGAATCACCACCTTGTCCCAGCGACATGTCTACAAATAGATGCTGCATTTAA 1170 0.4829 MEETTEMDKMNDDTMLPGFRFHPTDEELVDFYLRRKIQQKSLPIELIKQVDIYKYDPWDLPKLVASTGEKEWYFYCPRDRKYRNSPRPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGVKTDWMMHEFRLPSSPDSPPPPKKPFDKTLSPQARILLNFFVFFSKPCLSMRVFLQDSWAICRIFKKNSMSMAQKALSHTWMAQLPESMVSDMLAQSASRNHLISENMSCTTEIGSASGMRHYGGGNRQELYEQVSSANYPASDFLINASNTVVSNKAAQIPVSNADVADTFMFSTFESSGPCAYIGFEGPNNIMFSGVSVVSTPHHDVQGLSMTTSTVAEAIGFPFSLPPVSNDAWKPILPWESPPCPSDMSTNRCCI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2105 389 SUPERFAMILY NAC domain 10 197 IPR036093 GO:0003677|GO:0006355
Prci1g2105 389 Gene3D NAC domain 24 201 IPR036093 GO:0003677|GO:0006355
Prci1g2105 389 ProSiteProfiles NAC domain profile. 15 197 IPR003441 GO:0003677|GO:0006355
Prci1g2105 389 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Prci1g2105 389 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2105 Prci-Chr1 41870925 41873120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2105 2 231 NAC Transcription Factor Family AT1G26870 61.472 1.84e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g2105 NAM 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2105 - - pcin:129296062 791.186