Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2078 ATGATGCTCGGAGAGCCCCGTCACGCAAATCCGACGGTTCACATACCGCCGTGGCCGGTCATCGATGATCTGATGCCGGAGATGTACTCTCCTTACTCGATGAGCGGCATGTCTGCAAGCTCCGACGGCAATGCCAGCGGCGGTGATTACTCTCCGTACTATATGCAAGAAGCGCTGACGGCACTCCAGCGTTATCTGCCGTCGAACGACGCCGATATCGACTCCGACTCCGAGATTCTTGGACGGGAGCCGGACGCTCCGGTGGACGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTAAGGAGGTGCGCACGTGGTCGGTCACATGACTGGACTGAGTGTCCTTATGCTCATCCTGGAGAGAAGGCTCGCCGTAGGGACCCGAGGAATTATCACTACTCGGGTACTGCATGCCCTGATTTTCGCAAAGGGAACTGCAAGAAGGGAGATGCGTGCGAGTTTGCTCACGGCGTGTTCGAGTGCTGGCTTCATCCAGCCCGTTATCGTACTCAGCCATGCAAGGATGGCACCAGTTGCCGCCGAAGGGTCTGTTTCTTTGCTCACACGCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCGAGGAGTGCTAATTCGGTGGACTCGTATGATGGGTCTCCTCTCAGGCAAGCGATTGAGTCTTCTTGTGCCAAAACGCTTCCATTCATGTCGTCTCCGGGTTCTATTTCCCCTCCGGCAACTCCTCCTGCGGAATCTCCTCCTATGTCGCCGATGACAGAGTCTCTGAGCCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGGCTTCTCTGCGTAATTTACAGCTTGGAAAGGTAAAGTCACTTCCGCCGTCAAGAAATGTTCCAGTGGGGTCTCCTCGTTTTGGGTCTCCACGTGGATCGGTGCTCCGTCCAGGATTCTGCAGCCTCCCGTCAACCCCTACCGAGGCACCGATCCGTTCTTGTGTTAACTACTTCGATCTTTGGGACCAGAGTTGCGAGGAGGAGCCTGCGATGGAGAGGGTGGAATCTGGAAGGGATATACGGGCGAAGATGTTTGAGAAACTCAGTAAAGAGAACTCTCTGGGTCGATCGGGTCCCAGCACATCTGCTGGAGCTCCGGATGTTGGTTGGGTTTCGGAGCTGGTCAAGTGA 1167 0.5587 MMLGEPRHANPTVHIPPWPVIDDLMPEMYSPYSMSGMSASSDGNASGGDYSPYYMQEALTALQRYLPSNDADIDSDSEILGREPDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRNYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIESSCAKTLPFMSSPGSISPPATPPAESPPMSPMTESLSRSLGSSSINEMVASLRNLQLGKVKSLPPSRNVPVGSPRFGSPRGSVLRPGFCSLPSTPTEAPIRSCVNYFDLWDQSCEEEPAMERVESGRDIRAKMFEKLSKENSLGRSGPSTSAGAPDVGWVSELVK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2078 388 MobiDBLite consensus disorder prediction 238 252 - -
Prci1g2078 388 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Prci1g2078 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Prci1g2078 388 Gene3D - 136 199 - -
Prci1g2078 388 PANTHER UNKEMPT FAMILY MEMBER 56 388 IPR045234 -
Prci1g2078 388 MobiDBLite consensus disorder prediction 234 261 - -
Prci1g2078 388 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Prci1g2078 388 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Prci1g2078 388 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Prci1g2078 388 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2078 Prci-Chr1 41622225 41623918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2078 84 293 C2H2 Transcription Factor Family AT5G12850 48.848 3.81e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1g2078 zf-CCCH 3.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2078 - - qsa:O6P43_007837 650.973