Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2064 ATGGAGAAGGCCGGGATGATTCTGGCTTTTGATCTCCTTCTCCTCCTTCACCTTAACCTCCATTTAGATCCAGCAAGAGCAGCCTTTGGCGTCGGCGGTGACATTGGCGTCGGTGTAGGTGTTGGCGGCGGCGGCGGCGGCGGAGTGGTATGGGTTGGCGCCGGCGGGAGTAACGGTTCTCCGGGGCAGTCGGGGCCTTCTTCAGTGCCGAGGCAAGACAAAGCCTACGCGGCTCTCCAGGCATGGAAAGCCGCGATTACAGACGACCCACTGAGGATTCTGGAGAGTTGGAATGGTTCGAATGTGTGTTCTTATAAAGGGGTGTTTTGTGCGAATCCCGAGGATGCTTCCGGTGAGCTTGTGGTGGCGGGAATAGATCTCAACCACGCGAATCTTAGAGGAAGTCTCGTGAAAGAGCTCTCTTTACTCACCGAAATGTCTCTTCTCCATCTCAACAGCAACAGATTTACAGGTACAGTTCCTGATACGTTCAGAGACCTCTCTTCTCTTGAGGAATTAGACCTCAGCAACAACCAACTCTCAGGCCCTTTCCCCTCGGTGACCTTGTCAATGCCCAGTCTGGTTTACTTGGACCTCAGATTCAACTCTTTCTCCGGACCCCTCCCTGATGATCTTTTCAACAAGAATCTGGATGCTATTTTTCTCAACAACAATCAATTTGAAGGCGAAATTCCCCAAAATTTGGGCAATTCCCCTGCTTCCGTCATAAATTTAGCTAACAACAAGTTCAGTGGAAGCATCCCTGCGAGTTTCGGCTTCATGGGTTCTAAGCTGAAGGAGATTCTCTTCCTCAATAACCAGCTAACAGGGTGCATTCCTGAAGGGGTTGGGATCTTCACGCAGATGCAAGTTCTGGATGTCAGCTACAATTCATTGATGGGTCACTTGCCAGATACAATGTCTTGCCTGCAAGACATGGAAGTTCTGAATTTGGCGCACAACAAGCTTTCTGGGGAGTTATCGGACGTGATCTGCTCTCTGAGAAACCTTTTGAATCTCACGGTTGCCTATAATTTCTTTTCCGGGTTCAGCCAGCAATGCTCGAGGCTGTTCGTCAGGAATGTGGGTTTTGATTTCTCAGACAATTGCATTCCCGGGAGGGACATGCAGAGACCTCAACCAGAGTGTTCTGTGATCCCTGGTGGCAGCTTAAATTGTCTCAGAATCCCAACTCCGAAGCTTGTTTGTGGTTCGCTTGGCGTCGGTCTCTCCAAGCGCGCTCATATCAGCCCATCTTCTTCGCCTTGA 1269 0.5035 MEKAGMILAFDLLLLLHLNLHLDPARAAFGVGGDIGVGVGVGGGGGGGVVWVGAGGSNGSPGQSGPSSVPRQDKAYAALQAWKAAITDDPLRILESWNGSNVCSYKGVFCANPEDASGELVVAGIDLNHANLRGSLVKELSLLTEMSLLHLNSNRFTGTVPDTFRDLSSLEELDLSNNQLSGPFPSVTLSMPSLVYLDLRFNSFSGPLPDDLFNKNLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKFSGSIPASFGFMGSKLKEILFLNNQLTGCIPEGVGIFTQMQVLDVSYNSLMGHLPDTMSCLQDMEVLNLAHNKLSGELSDVICSLRNLLNLTVAYNFFSGFSQQCSRLFVRNVGFDFSDNCIPGRDMQRPQPECSVIPGGSLNCLRIPTPKLVCGSLGVGLSKRAHISPSSSP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2064 422 PRINTS Leucine-rich repeat signature 170 183 - -
Prci1g2064 422 PRINTS Leucine-rich repeat signature 310 323 - -
Prci1g2064 422 SUPERFAMILY L domain-like 77 370 - -
Prci1g2064 422 Gene3D Ribonuclease Inhibitor 243 385 IPR032675 -
Prci1g2064 422 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 68 398 - -
Prci1g2064 422 ProSiteProfiles Leucine-rich repeat profile. 169 190 IPR001611 GO:0005515
Prci1g2064 422 Gene3D Ribonuclease Inhibitor 72 242 IPR032675 -
Prci1g2064 422 FunFam Leucine-rich repeat receptor protein kinase EMS1 254 353 - -
Prci1g2064 422 SMART LRR_typ_2 143 166 IPR003591 -
Prci1g2064 422 SMART LRR_typ_2 310 334 IPR003591 -
Prci1g2064 422 SMART LRR_typ_2 167 190 IPR003591 -
Prci1g2064 422 SMART LRR_typ_2 191 215 IPR003591 -
Prci1g2064 422 FunFam Leucine-rich repeat extensin-like protein 1 76 237 - -
Prci1g2064 422 Pfam Leucine rich repeat 147 203 IPR001611 GO:0005515
Prci1g2064 422 Pfam Leucine rich repeat N-terminal domain 75 110 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2064 Prci-Chr1 41519820 41521196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2064 70 419 Leucine-rich Repeat extension Gene Families AT3G24480 49.714 1.28e-108 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2064 - - gmx:100775544 582.022