Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2053 ATGGGAAGAGCCGCCCGGTGGTTGAAGAGCTTGTTTGGGATAAAGAAAGACAGAAACCATGTTTCAGAGGGAGAACTCACAGATTTATGTCACAATCCAACCACTATACCGCCAAACATCTCGCCTGCAGAAGCTGCTTGGCTTCAGTCGATCTACACCGAAACAGAGAAGCAGCAGAACAAGCATGCCATTGCGGTGGCTGCGGCCACCGCTGCCGCCGCTGATGCCGCCGTGGCAGCCGCTCAGGCTGCGGTGGCCGTGGTTAGGCTGACCAGCCATGGAAGAGGCACCATGTTTGGCGGTGGTGGACACGAGAGATGGGCTGCCGTTAAGATTCAAACAGTATTCAGGGGATACTTGGCAAGAAAGGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCACTTGTGAAAGGCTATTTAGTAAGGAAGCAAGCCACAGCAACCTTTCATAGTATGCAAGCTCTTATCAGAGCCCAAGCCACTGTCAGGTCTCAGAAAGCTCGTAGGCTTATGAGCAAAGACAATGAAGCCTGTAGATTTGAAGCTCGAGCGCGAAGATCTATGGAGAGATTTGACGACACTAGGAGTGAGCATACTGCTCCCATTCACAGCAGAAGGATGTCTTCTTTTGATGCAACAATAAATAACTCTAACAGCTTCGATGGAAGCCCCAAAATATTGGAAGTAGACACTGGCAGGCCTAGATCGAGGTCTCGGAGGACCAACACTTCTTCAATTTCAGATTTTGGTGACGATTCACAATTCCAAGCACTTTCCTCTCCTCTTCCAGTCCCTTGTTGTCGTACCCCTGCTCGCCTATCCATACTGGACTGTCGCCGGAATCTGCAGGACTTCGATTGGGGGTTGACAGCGGAAGAATGCAGGTCGTCCACGGCACAGAGCACTCCTCGATTCACCAGTTCTTGCGGGTCTTTCAGCTGTCAGGCGACGGCTTGCAGGCGCGTTTGCGCCGGCGATGGATTTTGCCGGCAGTACGGGAATTTCCCGAATTACATGGCGAATACTCAGTCTTTTAGGGCGAAATTGAGGTCTCACAGTGCTCCAAAGCAGAGGCCAGAACCGAAGAGGAGGGTTTTGCTGAACGAGTTGATGGAGTGTAGGAGTAGTTTGAGTGGGGTTCGGATGCAGAGGTCTTGCTCGCAAGTTCAGGAAGCCATTAACTTCAAGAATGCAGTGATGGGCAAGCTCGAAAAATCTGCAGAATCTGGTAGGGGAAGAGACAGCAATTACTGGCAGAGGAGGTGGTGA 1275 0.5098 MGRAARWLKSLFGIKKDRNHVSEGELTDLCHNPTTIPPNISPAEAAWLQSIYTETEKQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGGHERWAAVKIQTVFRGYLARKALRALKGLVKLQALVKGYLVRKQATATFHSMQALIRAQATVRSQKARRLMSKDNEACRFEARARRSMERFDDTRSEHTAPIHSRRMSSFDATINNSNSFDGSPKILEVDTGRPRSRSRRTNTSSISDFGDDSQFQALSSPLPVPCCRTPARLSILDCRRNLQDFDWGLTAEECRSSTAQSTPRFTSSCGSFSCQATACRRVCAGDGFCRQYGNFPNYMANTQSFRAKLRSHSAPKQRPEPKRRVLLNELMECRSSLSGVRMQRSCSQVQEAINFKNAVMGKLEKSAESGRGRDSNYWQRRW 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2053 424 Gene3D - 57 131 - -
Prci1g2053 424 SMART iq_5 127 148 IPR000048 GO:0005515
Prci1g2053 424 SMART iq_5 104 126 IPR000048 GO:0005515
Prci1g2053 424 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Prci1g2053 424 PANTHER IQ-DOMAIN 5-RELATED 1 377 - -
Prci1g2053 424 MobiDBLite consensus disorder prediction 240 254 - -
Prci1g2053 424 MobiDBLite consensus disorder prediction 218 254 - -
Prci1g2053 424 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Prci1g2053 424 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Prci1g2053 424 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Prci1g2053 424 Pfam Protein of unknown function (DUF4005) 298 381 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2053 Prci-Chr1 41440275 41443145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2053 1 384 IQD Protein Family AT3G16490 50.508 4.57e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2053 - - qsa:O6P43_007858 516.538