Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2022 ATGGCTGAGCTACCCTGCTCAGAGATAGAGACAAGCATTTACACAAACTGGTCCTCACACTCTCCGTCCTCGTCCTCGTCCTCGTCCTCAACATCTGGACTGTCTCCGTCTCAGTCATTGCCAAACTCTGCTTCTGAGCCATTGCCAGCACAACAGAGGAAGCTCAAGCGGGGGCGGGATAGCAGCAACAGCAAGCATCCCGTGTACAGAGGGGTTCGAATGAGGGCGTGGGGTAAGTGGGTGTCGGAAATCCGGGAGCCCAGGAAAAAGAACCGGATCTGGCTCGGCACCTTCGCCACTCCGGAGATGGCGGCGCGTGCCCACGACGTGGCCGCGCTCGCTATCAAAGGCCATTCTGCCATTCTCAACTTCCCGGAACTCGCGGGTTCCCTGCCCCGACCTGCTTCCAACTCCCCCAGAGATGTTCAGGCCGCCGCAGCTAAGGCCGCTGCCATGGAGGTATTCAGTCCTCCGACGAAGTCGCTCTCGTCTTCCTCTTCGTCGTCGTCATTGGCAATGTCCTCCTCCTCCTCTGGCGACCCGTCCACCCCGGAGTTACTGGGCGAGATAGTGGAGCTGCCGCCTCTGGGGAGCAGTTTCGAGTCGCCCGACCCGGGCAACGATTTCGTGTTTTTTGACCCGGTGGATGGGTGGCTCTACCCTCACCCATGGTATCACAGCATTTATGGTGAAAAGGATTGTGGTGGGTTTTTCCTTGCGGATGACACGTTAATGCAAGAAGCAGAGAGTATGGCCCAGTGTGTATTTGAGAGCTCATTGTGGCAAAATTAA 792 0.572 MAELPCSEIETSIYTNWSSHSPSSSSSSSSTSGLSPSQSLPNSASEPLPAQQRKLKRGRDSSNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGHSAILNFPELAGSLPRPASNSPRDVQAAAAKAAAMEVFSPPTKSLSSSSSSSSLAMSSSSSGDPSTPELLGEIVELPPLGSSFESPDPGNDFVFFDPVDGWLYPHPWYHSIYGEKDCGGFFLADDTLMQEAESMAQCVFESSLWQN 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2022 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 198 - -
Prci1g2022 263 MobiDBLite consensus disorder prediction 16 49 - -
Prci1g2022 263 MobiDBLite consensus disorder prediction 16 68 - -
Prci1g2022 263 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Prci1g2022 263 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Prci1g2022 263 MobiDBLite consensus disorder prediction 157 183 - -
Prci1g2022 263 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Prci1g2022 263 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
Prci1g2022 263 Pfam AP2 domain 67 118 IPR001471 GO:0003700|GO:0006355
Prci1g2022 263 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Prci1g2022 263 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Prci1g2022 263 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Prci1g2022 263 MobiDBLite consensus disorder prediction 157 187 - -
Prci1g2022 263 MobiDBLite consensus disorder prediction 52 66 - -
Prci1g2022 263 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2022 Prci-Chr1 41079937 41081299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2022 40 227 AP2-EREBP Transcription Factor Family AT5G11590 61.576 1.39e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g2022 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2022 K09286 - qsa:O6P43_003984 306.219