Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2018 ATGAACAGATTTTGCAGCGGCGTAACCATGAGACAACTGGGTCTTCGTCTTTCTCTTCTCTCTCTAACACTCATCCCTGTTACAGCACAACAACAGATGAATGATAGTGTACCTTCACTCGATGGCATCTCCAGTTTCCAACCAAGTTTAGCAGTTGTCATAGGAATCCTATGTCTAATGTTTTCACTCACGTTCATTCTTCTCTTGTATGCCAAGTTCTGTCAACGCAGAGCTTTAGCTCACGTTGACCCTGAGAACCCCCCTGCTGCACTTGTGAGATCAAGGTCCAGATTCTCCGGAATCGACAAGACTGTCATAGAATCTCTCCCCTTCTTCAAATTCTCTACCCTCAAAGGCTCAAAAGAAGGTCTCGAATGTGCAGTGTGCTTGTCAAAGTTCGAAGACATTGAAATCCTCAGGCTTCTTCCCAAATGCAAACATGCCTTCCACATCGAATGCATTGATTATTGGCTTGAGAAACACTCTAGCTGTCCTCTTTGTAGACGAAAGGTCAGTCCTGATGACCCAACCATGCTCACCTACTCAACCAGTTTGAGGCTTCTAACTAGCCAGTCAGAGAACGGTGAGGAACCCAATATAGAGATCTTTGTTCAGAGAGAAGAAGAACGTCGTGGGTCTTCTAGATTCACTATTGGAAGCAGCTTTAGGAAATCTGGGAAGAGCATTAAGGAAGAAGAATTACCAATCCAGGAAGAAACAGAGCATCATGATGGAAAGTTGTATCACAAACATAACCACAAGATTACTATTAGTGATGTGGTGTTCAGGCACCGGTGGAGCAACGTGAGCTCTTCAGACCTCATGTTTTTGAATTCAGAGATGATTAGTTCTATGCAGAGCAAAAGATTCGATCTTTCGGAACAAAACGGCGAGCCGATTCGATCCTCAACGTCAGGAGAAAATGGGCATATCATCAACATAAAGGAGGAGATGGAGAGGAAGATATCCTTTGAGACCAAGGTAGGTGCATTAAACTCAGTTCTAGATGCGTCAGATTGTGAAGGAACTTCATCTTCCAGTCAAACATCAAAATATGTAAATCCGGGGGAGAAAAGATCGATGTCAGAAATCATTGGCGTATCAAGATTTGGAGATTTGGGTATGAGAGGCAGAGTCTTGAGGGATTCTTCAGTGATTGCAGATGATGTTAAAGAGGAAAGAAGGAGGCAGCTATGGCTGCCAATCGCCAGAAGAACAGTTCAATGGTTTGTGAATAGGGAAAGATCTCAGCCTTTAAATGTATAG 1266 0.4344 MNRFCSGVTMRQLGLRLSLLSLTLIPVTAQQQMNDSVPSLDGISSFQPSLAVVIGILCLMFSLTFILLLYAKFCQRRALAHVDPENPPAALVRSRSRFSGIDKTVIESLPFFKFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIECIDYWLEKHSSCPLCRRKVSPDDPTMLTYSTSLRLLTSQSENGEEPNIEIFVQREEERRGSSRFTIGSSFRKSGKSIKEEELPIQEETEHHDGKLYHKHNHKITISDVVFRHRWSNVSSSDLMFLNSEMISSMQSKRFDLSEQNGEPIRSSTSGENGHIINIKEEMERKISFETKVGALNSVLDASDCEGTSSSSQTSKYVNPGEKRSMSEIIGVSRFGDLGMRGRVLRDSSVIADDVKEERRRQLWLPIARRTVQWFVNRERSQPLNV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2018 421 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Prci1g2018 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 175 IPR013083 -
Prci1g2018 421 SMART ring_2 126 167 IPR001841 -
Prci1g2018 421 FunFam RING-H2 finger protein ATL43 101 175 - -
Prci1g2018 421 SUPERFAMILY RING/U-box 105 175 - -
Prci1g2018 421 CDD RING-H2_EL5-like 125 168 - -
Prci1g2018 421 Pfam Ring finger domain 125 168 IPR001841 -
Prci1g2018 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2018 Prci-Chr1 41018481 41020137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2018 22 421 C3H Transcription Factor Family AT4G28890 45.035 5.48e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2018 K10664 - gmx:100803207 511.916