Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2004 ATGTCTCTGCCAAAGGAGCAGGACTATGTAGGCTTGACAGAGCTTCCTTCAATGGAAAAAGGATCAGACAAGTTTTCTCAGAGAAACACCAGTGGCTTGAACCTCAAGGCCACTGAGCTACGACTTGGACTACCTGGGTCCGAGTCACCGGAGAGGGACGGTGCCGGGAAGAGTGCGGCGATGTGTGGGGCCAACAGGGGTTTCTCAGACACCATTAATGGTGGTTCTGGGAAGTGGGCTATGTCAGGCAACGGAGGATCTGATATGGGTTTGGGCAAAGAGGGCGGTTTGTTCTCTCCCAGGGGTGGCGCCAACCCACAACCATGTTTAGGTGCTTCCCTTGCCAAAGACAGCGTCCCAAACTCACCAAAGACATTGTTGCAGGAGAAGAAGCCCCAGATATCTGCTCTTCCTCCAAAGGAGCAAGTTGTGGGGTGGCCACCAATCAGATCCTTCAGGAAGAATTCGATGACATCTAATCCCCAGAAGAACGCTGATGATGCAGAAGCCAAGTCTGGATGTCTTTTTGTCAAAGTAAGCATGGATGGAGCCCCCTACTTGCGGAAAGTGGATCTCAAAAACTTTGGTAGTTATCGCCAACTTTCTTCAGCACTCGAAAAGATGTTCAGATGTTTTACGATCACTCAGTGTGGATCTCATGGAATTTCGAGTCATGATAATTTGAGTGAAAGTAGGTTGAAGGATCTTCTTCATGGTTCAGAATATGTGCTCACATACGAAGACAAGGACGGTGATTGGATGCTAGTTGGTGATGTACCCTGGGAGATGTTCACTGCCTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGCCTAGCACCAAGAGCAATGGAGAAGTGCAAAAGCCGAAACTAG 885 0.4859 MSLPKEQDYVGLTELPSMEKGSDKFSQRNTSGLNLKATELRLGLPGSESPERDGAGKSAAMCGANRGFSDTINGGSGKWAMSGNGGSDMGLGKEGGLFSPRGGANPQPCLGASLAKDSVPNSPKTLLQEKKPQISALPPKEQVVGWPPIRSFRKNSMTSNPQKNADDAEAKSGCLFVKVSMDGAPYLRKVDLKNFGSYRQLSSALEKMFRCFTITQCGSHGISSHDNLSESRLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTASCKRLRIMKSSEAIGLAPRAMEKCKSRN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2004 294 FunFam Auxin-responsive protein 169 286 - -
Prci1g2004 294 MobiDBLite consensus disorder prediction 1 61 - -
Prci1g2004 294 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 281 IPR003311 GO:0005634|GO:0006355
Prci1g2004 294 Pfam AUX/IAA family 38 285 IPR033389 -
Prci1g2004 294 ProSiteProfiles PB1 domain profile. 174 276 IPR000270 GO:0005515
Prci1g2004 294 MobiDBLite consensus disorder prediction 20 36 - -
Prci1g2004 294 Gene3D - 168 288 - -
Prci1g2004 294 SUPERFAMILY CAD & PB1 domains 172 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2004 Prci-Chr1 40880720 40883354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2004 151 292 B3 DNA Binding Superfamily AT1G19850 29.577 3.45e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci1g2004 AUX_IAA 9.9e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2004 K14484 - gmx:100803754 414.461