Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1997 ATGTCGGACATGGACCCTCCTCCCAAGAGCTGGAGCATCTACACCCGAGCTGAGATTCTCGCCAAGTACGAAGTCATGGAGCGAGTCGGCGCTGGAGCTTACTCCGACGTCTACAAAGGCCGTCGTCTCTCCGATGACCTCATCGTCGCCCTCAAAGAAGTTCACGATTGCCAATCTGCCGTCCGAGAAATCGAGGCCCTGCGGATCCTCCAGGGATACCCTAATGTCGTCGTCTTGCACGAGTACTTCTGGCGCGAGGACGAGGACGCCGTCCTCGTTCTCGAGTTTTTGAGAACTGACTTGTTGACGGTCATCAAAGAGGCCAAGAAGGAGGGTGCGGGTCTAAGCGTTGGGGAGATTAAGCAGTGGATGATCCAGATTCTTAGCGGGATCGATGCGTGCCACGCAAATATGATCGTGCATCGAGATTTGAAGCCTAGTAATTTGTTGATTTCGGAGGATGGCGTGCTGAAGTTAGCTGACTTTGGACAGGCAAGGATACTTATGGAGCCCGAATTTCATGCTATGGATGAAAACCCACCACCTTATGAAGACGATACTTCACATACTGAGAGACCACTTCAACATCCTGAAGTCTTTCCTCAGACACACAACCAAAACCAAGAAAGCTATGGAAATCAAGAGCAGGAAACGGAAGCTCAAGATGAATATTATAGAGTATTAGAAGAGATAAAAACTAAGGGCTCGATAGATGACGTGGATAAGGATACCAACTTTCAGGATGGAAATACATCTTGTCTTGCAACTTGCACAATAAGTGACATAGAAGATGATTTTATGAAGACTTCGTTTACGTATGAAGCAGATGAGAGAGACGATGAAGAAGGTGGTCTCACACCATGCGTTGGAACCCGATGGTACAGGGCTCCTGAACTGCTTTATGGATCAGATGACTATGGGTTAGAGATTGATCTCTGGTCATTGGGCTGCATCTTTGCAGAGCTCATAACTCTTGAGCCCTTATTTCGTGGGACAGGTGATATTGATCAGCTCAGCAGAATTATTAACGTTTTAGGCAACCTCAATGAGGAAGTTTGGTCTGGTTGTTCCAAGCTTCCTGATTATGAAAAAATCTCGTTCACCAAGGTGGAGAACCCTCCAGGTCTTGAAGGCTGCCTTCCCAACCGATCCCCCGATGAAGTCTCTCTAGTGAAGAAACTGGTTTGTTATGATCCGGCTAGAAGAGCTACAGCAATGGAGCTTCTCCAAGACAAGTATTTTGGTGAAGAACCACTTCCTGCGCCTATTTCTGAGCTGCGGGTTCCTTTGACAAGAACTGCACACGATGAAGACTCTTGTGGTAGGCCTTGTGATCTCAATGAGCTGGGTTTCGATTCTGATTTTGAGGACTTTGGCGCTGTGCAAGTCATCAGAGCTGGTACTGGTTACTCTATACGATTTCCCTGA 1428 0.4748 MSDMDPPPKSWSIYTRAEILAKYEVMERVGAGAYSDVYKGRRLSDDLIVALKEVHDCQSAVREIEALRILQGYPNVVVLHEYFWREDEDAVLVLEFLRTDLLTVIKEAKKEGAGLSVGEIKQWMIQILSGIDACHANMIVHRDLKPSNLLISEDGVLKLADFGQARILMEPEFHAMDENPPPYEDDTSHTERPLQHPEVFPQTHNQNQESYGNQEQETEAQDEYYRVLEEIKTKGSIDDVDKDTNFQDGNTSCLATCTISDIEDDFMKTSFTYEADERDDEEGGLTPCVGTRWYRAPELLYGSDDYGLEIDLWSLGCIFAELITLEPLFRGTGDIDQLSRIINVLGNLNEEVWSGCSKLPDYEKISFTKVENPPGLEGCLPNRSPDEVSLVKKLVCYDPARRATAMELLQDKYFGEEPLPAPISELRVPLTRTAHDEDSCGRPCDLNELGFDSDFEDFGAVQVIRAGTGYSIRFP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1997 475 Pfam Protein kinase domain 23 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1997 475 Pfam Protein kinase domain 285 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1997 475 Gene3D Transferase(Phosphotransferase) domain 1 15 222 - -
Prci1g1997 475 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Prci1g1997 475 PANTHER CELL DIVISION PROTEIN KINASE 22 420 - -
Prci1g1997 475 ProSiteProfiles Protein kinase domain profile. 23 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1997 475 SMART serkin_6 23 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1997 475 Gene3D Transferase(Phosphotransferase) domain 1 254 422 - -
Prci1g1997 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Prci1g1997 475 FunFam Cyclin-dependent kinase F-1 14 108 - -
Prci1g1997 475 SUPERFAMILY Protein kinase-like (PK-like) 7 430 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1997 Prci-Chr1 40806074 40808250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1997 7 475 Core Cell Cycle Gene Families AT4G28980 62.343 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Prci1g1997 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1997 - - pcin:129306938 975.311