Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1970 ATGGAGCAGAACGACGTGATCTCGCCGTTCGTCATAAAGACGTACCACTTAGTCAGCGATCCCAGGACCGATAATCTCGTTGCTTGGGGGCCAGCCAATAACAGCTTCGTCGTCGTCGACCCTTTGGATTTCTCCCGCAGGATCTTACCTGCTTATTTCAAGCACAATAACTTCTCCAGCTTCATTCGTCAGCTCAATACCTATGGTTTCAAGAAGGTGGATCCAGATCGATGGGAGTTTGCGAACGAGTGGTTCCTGCGAGGGCAGAAGCAGTTGCTAGTGAACATAGTGAGGAAGAAGCAGAGCAAGAATAAGAACATAGCGTATTTTGAGGGGACGATGCTGGAGGAAATGGATGAGGAAGTGTTGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAGGCGTTGGACAAGGAGGTTGAGTGGATGAATAAGAGGCTGGAGGCTACCGAGAGACGGCCTCAGCAAATGATGGCGTTTCTGTGCAAAGTGGTGGAGGACCCTGACGTTCTATCTCGCGTATTGGCCGAGAGAGAAGGAAGACAGTTGGCGGAGAAGAGGCGGCGCTTGATATCGCCGGCCACCGCTGCCACCACCTCGTCCTCGTCTTCGTCCGGCATGCCTGTCAAAACAGAGGTGGAAGAAGACGATGCAACCGTGGGAGGTATTATGTCGCCGTCGCCGGAGACTGGTCTCGAAGCTCATAATTTTTGTCAATCTTCTCGGCCCCAGGAATCACCGTATTGGTGGGGCCAAAACCAATCTACGCTGGATACACCTCCGCGGAGTAGTGACACGGCAGTGGGAACGGCGGTGAGAACCGTGTGGCCACCTCTGGGAGGGACGTATTCGGGATGCCACGGCGGTGACAGTCAATTGAGTACTTATTTTACAGATATGGCGCCGGAGACTCAAAGCTGTCCTCCTCCGCCGGCGCCGGCGCCGGCGCCTTGTCCATTTTCCCTGTTGGAGTGGGGCTTTTAG 987 0.541 MEQNDVISPFVIKTYHLVSDPRTDNLVAWGPANNSFVVVDPLDFSRRILPAYFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQKQLLVNIVRKKQSKNKNIAYFEGTMLEEMDEEVLVMEIARLKEEQKALDKEVEWMNKRLEATERRPQQMMAFLCKVVEDPDVLSRVLAEREGRQLAEKRRRLISPATAATTSSSSSSGMPVKTEVEEDDATVGGIMSPSPETGLEAHNFCQSSRPQESPYWWGQNQSTLDTPPRSSDTAVGTAVRTVWPPLGGTYSGCHGGDSQLSTYFTDMAPETQSCPPPPAPAPAPCPFSLLEWGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1970 328 Coils Coil 120 154 - -
Prci1g1970 328 MobiDBLite consensus disorder prediction 194 210 - -
Prci1g1970 328 MobiDBLite consensus disorder prediction 187 269 - -
Prci1g1970 328 FunFam Heat stress transcription factor B-4 2 100 - -
Prci1g1970 328 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1970 328 Gene3D - 2 100 IPR036388 -
Prci1g1970 328 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Prci1g1970 328 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1970 328 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1970 328 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1970 328 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1970 328 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci1g1970 328 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 225 IPR027725 -
Prci1g1970 328 MobiDBLite consensus disorder prediction 233 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1970 Prci-Chr1 40598405 40599746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1970 6 199 HSF AT3G24520 59.091 2.89e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci1g1970 HSF_DNA-bind 1.8e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1970 K09419 - gmx:100794896 332.413