Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1956 ATGAAGAAGAAGATCGACTCCATCTCTCTCTTCCACTCTCATCTTCTCCTCCTTCCCTTCTTTCTCGCCGCATTATCCCTCACTCCCTCGCACCATCTTTCCATCACCGCCAATGCAGCTCCCACTCACACCCAAGCCGTCTTCATCCCGCAGCGTCAACTTCTCTACTACAGAGACCAGTTCGGTGACAGAGGAGAGCTCGTGACCCTCGACCCTTCTCTGGTCTTCGAGAATGATCGCATCAGGAGTGCTTACATTGCTTTACAAGCTTGGAAGCAAGCCATTCACTCTGATCCCCGAAATTTCACTGCCAATTGGGTTGGATCCAATGTCTGCAACTACACTGCTGTTTACTGTGCTCGCGCGCCGGACAATCCCAGGATCCGTACAGTTGCCGGCATTGATCTCAACCATGGCGACATTGCAGGCTACTTGCCTCGAGAGCTCGGGCTTCTGGCTGATCTTTCTCTGTTCCACATTAACTCGAACAGGTTCTGTGGTACTATTCCCCACGAGTTCCGCAAGTTGAAACTGCTCTTTGAACTGGATCTTAGTAACAACAGGTTCGCCGGCAAGTTCCCGGAGGTGGTTTTGAGTCTTCCCTCCCTCAAGTTCTTGGATCTCAGATATAATGAATTTGAAGGGACTGTACCCAAAGAACTATTCGACAAGGATCTGGATGCCATCTTTATTAATAACAACCGCTTTGCCTTCGATCTTCCTGACAATTTTGGCAACTCTCCGGTGTCGGTCATCGTCCTCGCTAACAACAGGTTCCGTGGCTGCATCCCGGCGAGCTTGGGCAATATGTCAAATCTCAACGAGATCATTCTGATGAACAATGCGTTCCGTTCGTGCTTGCCGTCCGAGATTGGGAGGCTGAAGAACTTGACGGTGTTCGATGTGAGCATTAATCAGCTGCTAGGTCCCCTGCCAGACACCATTGGAGGTATGGTCAGTCTCGAGCAGCTGAATGTAGCTTACAATTTGCTCTCTGGGAAAATTCCTGCCAGTATTTGCATGCTACCCAATCTACAGAACTTTACGTACTCTTTTAACTTCTTCACTGGCGAGCCACCGGCGTGCTTGGCTCTGCCAGCTTTTGATGACCGAAGGAATTGCTTGCCGGGGAGGCCACTGCAGAGGTCAGCAGCTCAATGTATGTCGTTCTTGTCTCGACCAGTTGACTGTAACTCGTTTAAATGTAAACCATTTGGTTCTTCGCCGTCGCCCGGGGTGGCTCCTTCACCACCTTCACAAGGTTCGCCTTCGCCATCGCCCGGGGTGGCTCCTTCACCACCTTCACAAAGTTCCCCACCGCCGTCGCCTGAAGTGGTTCCTTCACCTCCGCAAATTTTACCTTCGCCACCCGGTGTTTCACGTTCTCCCCCTGTTTATAGTCCGCAACATCCGCCTCCACCGCCGTCACCATTGTCTTCTTCACCTCCACATTCACCGGTTTACTCTCCGCCATCTCCTTCAAGCTCAATTCCACCATGGTCTTCATCACCTCCACCTTCACCAGTTTACTCTCCACCATCTCCTTCAAGCCCAACTCCACCATGGTCTTCATCACCTTCACCTTCACCAGTTTACTCTCCGCCATCTCCTTCAAGCCCAACTCCACCAGGGTCTTCTTCACCTCCATCTTCTCCAGTTTACTATCCGCCATCTCCTTCAAGCCCTAGTCCACCATTGCCTTCGTCACCTCCTTCTTCACCAGTTCACTCTCCGCCATCACCTTCAAGCCCAAGTCCACCATTGTCTTCGTCACCTCCATCTTCACCAGTTTACTCTCCGCCATCTCCTACAAGGCCAAGTCCAGGTTATTCATTGCCTCCACCGCCACCACCTAGCTATTCTCCATCAACACCGTCACCCCCACCTCCAGTTTATTCACTGCCTCCACCTTCCCCGCCTTCACCGTCGCCACCTGCAAATTCACCATCACCAACGGCTCCAACACCGCGGCTGCCTCAGCATTCCCCTCCACCTGCTCACTCATCTTCACCACCTATTTATCCCTATCTATCACCTCCTCCCCCGCCTTGTGTAGAACCACCTCCACTTGCATCCCCACCACCGTGCGAAGAGCATTCTCCACCATCTCCTCCAACAACTTACCTTCCACCATCATCTCCATTTCCTCGACCACCGCCAGAATATACATCTCCACCATCTCCCCCTGTCCAGTACAGCTCCCCCAGACCTCCTTCCCCTGTTCATTACAGTTCACCACCACCTTCCCCTGTATACAAAGGGCCCATGCCGCCTGTTGTTGGAGTTCCATACGCGTCCCCTCCCCCACCGCCCTTCTATTGA 2322 0.5245 MKKKIDSISLFHSHLLLLPFFLAALSLTPSHHLSITANAAPTHTQAVFIPQRQLLYYRDQFGDRGELVTLDPSLVFENDRIRSAYIALQAWKQAIHSDPRNFTANWVGSNVCNYTAVYCARAPDNPRIRTVAGIDLNHGDIAGYLPRELGLLADLSLFHINSNRFCGTIPHEFRKLKLLFELDLSNNRFAGKFPEVVLSLPSLKFLDLRYNEFEGTVPKELFDKDLDAIFINNNRFAFDLPDNFGNSPVSVIVLANNRFRGCIPASLGNMSNLNEIILMNNAFRSCLPSEIGRLKNLTVFDVSINQLLGPLPDTIGGMVSLEQLNVAYNLLSGKIPASICMLPNLQNFTYSFNFFTGEPPACLALPAFDDRRNCLPGRPLQRSAAQCMSFLSRPVDCNSFKCKPFGSSPSPGVAPSPPSQGSPSPSPGVAPSPPSQSSPPPSPEVVPSPPQILPSPPGVSRSPPVYSPQHPPPPPSPLSSSPPHSPVYSPPSPSSSIPPWSSSPPPSPVYSPPSPSSPTPPWSSSPSPSPVYSPPSPSSPTPPGSSSPPSSPVYYPPSPSSPSPPLPSSPPSSPVHSPPSPSSPSPPLSSSPPSSPVYSPPSPTRPSPGYSLPPPPPPSYSPSTPSPPPPVYSLPPPSPPSPSPPANSPSPTAPTPRLPQHSPPPAHSSSPPIYPYLSPPPPPCVEPPPLASPPPCEEHSPPSPPTTYLPPSSPFPRPPPEYTSPPSPPVQYSSPRPPSPVHYSSPPPSPVYKGPMPPVVGVPYASPPPPPFY 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1956 773 PRINTS Proline rich extensin signature 406 418 - -
Prci1g1956 773 PRINTS Proline rich extensin signature 418 439 - -
Prci1g1956 773 PRINTS Proline rich extensin signature 460 477 - -
Prci1g1956 773 PRINTS Proline rich extensin signature 443 459 - -
Prci1g1956 773 PRINTS Proline rich extensin signature 479 504 - -
Prci1g1956 773 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 540 - -
Prci1g1956 773 FunFam Leucine-rich repeat extensin-like protein 1 85 246 - -
Prci1g1956 773 Gene3D Ribonuclease Inhibitor 85 247 IPR032675 -
Prci1g1956 773 Pfam Leucine rich repeat 155 212 IPR001611 GO:0005515
Prci1g1956 773 SUPERFAMILY L domain-like 84 366 - -
Prci1g1956 773 MobiDBLite consensus disorder prediction 408 760 - -
Prci1g1956 773 MobiDBLite consensus disorder prediction 410 760 - -
Prci1g1956 773 FunFam Leucine-rich repeat extensin-like protein 5 247 386 - -
Prci1g1956 773 Gene3D Ribonuclease Inhibitor 248 383 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1956 Prci-Chr1 40433673 40436639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1956 30 402 Leucine-rich Repeat extension Gene Families AT3G24480 76.471 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1956 - - qsa:O6P43_007947 659.062