Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1952 ATGGCAAACCGACTAAAGGAAGATGAGAAGAATGAACGAATAATTCGGGGCCTTCTGAAACTTCAAGAGAATCGCAGATGCATTAATTGCGGCAGCCTGGGACCGCAGTATGTATGCACAAATTTTTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACACATCGAGTTAAGTCAATTTCGATGGCTAAATTTACTTCACAAGAAGCTAGTGCACTTCAGGAAGGAGGAAATCAGCGTGCAAAGGAAATTTATTTTAAAGAATGGGATCCACATCGTCATTCTCTTCCTGATAGCAGTAATATTGACAAGCTCCGGGACTTCATTAAGCATGTTTATGTGGACAGAAGATTTAGTGGTGAGAGGACCCATGACAAACCACCGAGAGGAAAAATGGGTGACAAAGATGATTTTTATGAAAACAGAAGAGTTGAGACATATCAGGGAGGATCTAAAAGCCCGCCATATGAGGATGCATATGAGCGTCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGACAATATGGTGATTATAGGAGAAGCCCAGGTCGTCCACCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGGAGATGGAAGAAGACTTGAAGATCGTAGAATATCTGATGGAGATTATAAGCTGGAAGGCCAATCACCTGAGCGAACAAAAGATCTTGATTCTTCAAGTTCACCAGTTGTACGGCCTGTTAGAGATATTTTAGGAGAAAATGTAGTTCCTCTTCGAATAAGTGAACCGCCCAAAACAAACAGTGGGAAGGCTGCTGATGGCTCTGCACTCACACAGAGAACTGCATCTTCCGGTAGCATAGCATCTAGTAATGGAAACGCAGCAGAAGTTAAGCTTGAGAGTACTAAGAGCCTTATTGATTTTGATGCTGAGCCCGAACCTCCTGTTGCTCCAGCAATTCCCCAAGCTCAACAAACTACTGCTGTCCAATCTGCTGTTCAGCCAGCACATTCTAGTGATGACAACTGGGCATCTTTTGATACTGCCCCTGTGGCGAAAACAACCCAAGGTCCTTCAAATTTTAGTCCACTTGACTCTGTTCTCTCACAGCTATCAATGCCATCACCTGCCCCTGCCCAGGCTTCTGGAGTTCAAGGGCCTCTGCCAGCATCAGCTGCCACTGCTGCTGCTGGAGCTGGAACTCTTGGCAACTTCTCATCAGTACCTCCGAGTGGTACTTATGTAACAGCCCCTGGATTGACAATGGTGCCGCCAATCAATGATGCAGTCCAGTGGGCCAGTGCGCAACGCAACCAACCTGTGTTTCCTACAACTGGTAGTCATCCTACTACTCAACAATTTATTCCATCAACAGGTGGATTTTTGAATGGTCAGCAGTGGAATGTATCTCCAGTGCCCACAATGCAAGGGCACCCTAGCATACGAATGCCACATGCATCCCCTCTTACCTCGAAACGTGCCAATGAAGTTAGCTCTAGCGCTGCTTCACAGCCTTCAATAGAAGTACAACAAGGTGGAAGAAAAGAACTTCCTGAGGATCTTTTTACTGCAAAGTATTCATCCTTTGCTTCTCTGGCTCCCGGGTGGCAAATGCGTCCTCCCCATGGCATGGGTATCTATATGCAATATAATACTGCAGCGCCCATGCCAAGTTTTCCACAGTCATCAAAATCAACAAATCCATTTGACGTCAGCAGTGAACCACCTCCAGTTCAAGCCCCAACATTTCCTTCCATGTCATCCTTGCAAGGTGTTCTGCCAAGTATACCACCTTCTTCAGGTGTAATACACCCCTTGAGCCTGGGCAATCCGTCACTTTCCTGGAACTCACCCCGGCCATCATATGGTTCAGTACTTCCTCCGCAAGCTCAAGTTCACGCACCAGCGATGGCACCGAGGGCATACCTGGGGCAACAAGTGCCAACTAACATGCCAGTGCCTGGGCATCAGGAAATTGGGAATTCTGGCGCACGGGGGGCTGCTTTTGGCTTCTCAAATCCAGATCAGCAGATGACTGGTATGTTCTCAACACCTGCTGCAGCAAATTCCTTCCCTGCTGGAGGCAACCCCTTTGGGTGA 2109 0.468 MANRLKEDEKNERIIRGLLKLQENRRCINCGSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEASALQEGGNQRAKEIYFKEWDPHRHSLPDSSNIDKLRDFIKHVYVDRRFSGERTHDKPPRGKMGDKDDFYENRRVETYQGGSKSPPYEDAYERRYSDRSSPGGRSPGYDQESRQYGDYRRSPGRPPIINDWRREDRFGDGRRLEDRRISDGDYKLEGQSPERTKDLDSSSSPVVRPVRDILGENVVPLRISEPPKTNSGKAADGSALTQRTASSGSIASSNGNAAEVKLESTKSLIDFDAEPEPPVAPAIPQAQQTTAVQSAVQPAHSSDDNWASFDTAPVAKTTQGPSNFSPLDSVLSQLSMPSPAPAQASGVQGPLPASAATAAAGAGTLGNFSSVPPSGTYVTAPGLTMVPPINDAVQWASAQRNQPVFPTTGSHPTTQQFIPSTGGFLNGQQWNVSPVPTMQGHPSIRMPHASPLTSKRANEVSSSAASQPSIEVQQGGRKELPEDLFTAKYSSFASLAPGWQMRPPHGMGIYMQYNTAAPMPSFPQSSKSTNPFDVSSEPPPVQAPTFPSMSSLQGVLPSIPPSSGVIHPLSLGNPSLSWNSPRPSYGSVLPPQAQVHAPAMAPRAYLGQQVPTNMPVPGHQEIGNSGARGAAFGFSNPDQQMTGMFSTPAAANSFPAGGNPFG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1952 702 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Prci1g1952 702 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Prci1g1952 702 PANTHER ARFGAP/RECO-RELATED 1 702 IPR044820 GO:0005096
Prci1g1952 702 MobiDBLite consensus disorder prediction 123 147 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 274 298 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 672 702 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 474 516 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 312 348 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 123 298 - -
Prci1g1952 702 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Prci1g1952 702 MobiDBLite consensus disorder prediction 199 236 - -
Prci1g1952 702 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Prci1g1952 702 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Prci1g1952 702 MobiDBLite consensus disorder prediction 561 576 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 494 513 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 561 594 - -
Prci1g1952 702 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Prci1g1952 702 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Prci1g1952 702 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Prci1g1952 702 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Prci1g1952 702 MobiDBLite consensus disorder prediction 323 348 - -
Prci1g1952 702 CDD ArfGap_AGFG 12 122 - -
Prci1g1952 702 MobiDBLite consensus disorder prediction 675 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1952 Prci-Chr1 40404309 40412889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1952 12 122 C2H2 Transcription Factor Family AT4G21160 32.479 1.12e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1952 - - gmx:100817254 926.006