Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1949 ATGGATTTAGAAGAAAAGTTCCTTGCTAAAGTTTCTGGTCTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACGCCGGAGAAAAATGGCCATTCAGATGATGCCTCAAGAAGTCCAGAACTCCTGCAAGAGTTCCTAAAATCTGGTCCGAAAAAGGAACTTCTTCGGACATGCTTTGACAAAGACAAAAAGAATATTTCATCAAAAAGCAGGGTGACTGAAAGTAAGTCAAGTAAGATAATCAAGAAACAGGACTCAAAAAAGGTTTCTAGCGGTAACCAGTCCTCTAAAAAGCAGCATAGAAAGGGAGAAAATCCCACGAGACTCCTGCCAACGCCTGACCAGTCTTCGGATTTTGGGCATACAAACTCCTGGATCTGTAAAAATTCTGCTTGTAGAGCTGTTCTTTCTACAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTCTGCACGTCTGAATCTACTAAGGGTGATTCCTGTGGGTTATCTTGCCATATTGAGTGTGCGATTCAACATGAAAAAGTCGGAGTTGTTGATCATGGGCAATTGATGCAACTAGATGGTGGCTATTGTTGTGCAACTTGTGGTAAAGTTACAGGGATACTTGGGTGTTGGAAAAAGCAGCTAAGTATAGCAAAAGATGCTCGACGTGTAGATGTGCTCTGTTATAGAATATATTTGAGCTACAGGCTTCTAGATGGGACTTCGAGGTTTAAAGAACTGCATGAGATTGTGCAAGAGGCGAAGGCTAAACTGGAAACAGAAGTGGGTCCAGTTAATGGTGTTTCTGCCAAGATGGCACGGGGCATTGTCAGCAGACTCTCTATTGCCAGTGATGTGCAGAAATTGTGCTCCCTTGCTGTTGAGAAAGCTGACGAGTGGCTGGCCTCTGTTTCGAATGTAAATCCAGACTCCAGAGAGGGTTCACTCCCTGCTGCCTGCAAGTTTGTTTTTGAAGAAGTGACAGCTTCTGCGGTCAAAATCATTTTGATTGAAATGTCTAATTCATCTTCCGAGGACATCAAAGGTTTCAAGCTCTGGTATTACAAGAGTGGGGAGGAATTGCACACTAAGGATCCTGTTTGTGTTTTCCCGAAATCTCAGAGGAGGATTCTGATATCAAATCTCCAACCTTGCACAGAATATACATTTCGGATTGTCTCTTACACAGATACATGTGATCGGGGTCATTCTGAGGCCAAATGTTTCACTAAGAGCATTGAAATAATTAGAAAAAATCCTTCTTCGTTAGCTTCTTTGAATCATAATAAAGAGAACCATAAAACTGGAGGCACTTCTTCTGACCCCAAAAGGGAGCCCAATCCTTCAATGGCAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAGTGCTGCGCCTTGCTTGGGCTCAAGAACAAGGTTGTTTTGAGGGATTTTGCTGTGCTGATGTGAAAAATTGCTGTGGAGGAAGTGAAATGGTTGGGCCAAAATATTCAGAAGAGACATTGCCTAAAGTGTCAAGAGGCCTTGATTTAAATGTTGTCTCAGTTCCTGATTTAAATGAAGAATTAACACCACCTTTTGAGTCTTCTAGGGATGAAGATAACGGTTGCACTTTGCAGCAGGCTATTGGGGCTGATGACGATGCTGCTTCTCACGACATTGAGAAGATTGGCTTAGCAAGATCCCATGGAAGTGGTGACTCACAGACATGGGCCCACAGGCCCACCGGAGAAGTGCCGGCTGTTGACTCTCGTGTGGATGCTGCATGCAGGAAAAGAGTAGCAAGCACAAATGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGATCTCCTTTACGCATTTCTGAAGGATCTTGTTCCCTGGATGAGAACTTTGAGTATTGCGTGAAAGTGATTCGCTGGCTAGAATGTGAGGGCCACATTAAGCAGGAATTTCGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCAACAGAGCAAGAACGTAGGGTGGTCAATACCTATATTCAAACTTTGATTGACGACCCAGGTAGTTTGGCTGGACAGCTGGTTGACTCTTTTTCTGATATTATATCTAACAAGAGGCCAAGAAATGGATTCTGTGGTAAGCTTTGGCATTAA 2154 0.4308 MDLEEKFLAKVSGLQSLSSSVQSTPEKNGHSDDASRSPELLQEFLKSGPKKELLRTCFDKDKKNISSKSRVTESKSSKIIKKQDSKKVSSGNQSSKKQHRKGENPTRLLPTPDQSSDFGHTNSWICKNSACRAVLSTDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTKGDSCGLSCHIECAIQHEKVGVVDHGQLMQLDGGYCCATCGKVTGILGCWKKQLSIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEIVQEAKAKLETEVGPVNGVSAKMARGIVSRLSIASDVQKLCSLAVEKADEWLASVSNVNPDSREGSLPAACKFVFEEVTASAVKIILIEMSNSSSEDIKGFKLWYYKSGEELHTKDPVCVFPKSQRRILISNLQPCTEYTFRIVSYTDTCDRGHSEAKCFTKSIEIIRKNPSSLASLNHNKENHKTGGTSSDPKREPNPSMADSGFKVRDLGKVLRLAWAQEQGCFEGFCCADVKNCCGGSEMVGPKYSEETLPKVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAIGADDDAASHDIEKIGLARSHGSGDSQTWAHRPTGEVPAVDSRVDAACRKRVASTNEETHDCDSTLINGSPLRISEGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTYIQTLIDDPGSLAGQLVDSFSDIISNKRPRNGFCGKLWH 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1949 717 Pfam PHD - plant homeodomain finger protein 126 244 IPR032881 -
Prci1g1949 717 MobiDBLite consensus disorder prediction 433 463 - -
Prci1g1949 717 ProSiteProfiles Fibronectin type-III domain profile. 325 424 IPR003961 GO:0005515
Prci1g1949 717 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 717 IPR044514 GO:0010048|GO:0040029
Prci1g1949 717 MobiDBLite consensus disorder prediction 65 116 - -
Prci1g1949 717 CDD FN3 355 406 IPR003961 GO:0005515
Prci1g1949 717 MobiDBLite consensus disorder prediction 65 85 - -
Prci1g1949 717 MobiDBLite consensus disorder prediction 12 28 - -
Prci1g1949 717 MobiDBLite consensus disorder prediction 11 40 - -
Prci1g1949 717 SUPERFAMILY Fibronectin type III 333 414 IPR036116 GO:0005515
Prci1g1949 717 Gene3D Immunoglobulins 310 416 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1949 Prci-Chr1 40350936 40357781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1949 87 710 PHD Gene Family AT3G24440 47.649 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1949 - - gmx:100780157 1202.19