Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1899 ATGAAAGCAGCCACTGCGTTGGGAGCTAAAACTGCAAGAGCTTGTGATAGCTGCCTTCGCCGACGAGCTCGATGGTTCTGCGCAGCCGATGACGCTTTCTTATGCCATGGCTGCGACAATCTGGTTCACTCTGCGAATCAGTTGGCCAGCAGACATGAAAGGGTTCGTCTCCAAACCGCATCGTGCTCCAAAAAGGCAATATCGCAAGTATGGTATAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCATAATAGCAAGCAGTTATTGGCTCAGAAAAAATCCAAACATGAAGAAAAGGGAGCGATTTTTAATAGTAGTATTCTTCCCGTCGTGCCGGAGCTCGGAAGCGAAGAAGGTGGGCTGGACGAGAGTGACGAGCAGTTTCTTTGCCGGGTTCCGGAGTTTGATCCGTTTGAAGACGACCTTTGCAACATCTACAGCGAAGTTGGCGATGAGAGGTTGGACGTTGTGATGAAGAAAGATGATGTGAATGGGGGGCAAGATGAAGCAACATGTGACCTAGACAATTTTTCAGAGTTTCTTGCGTCGGATATGGATCTTGCAGAGTTTGCTGCTGATGTTGAAAGCTTACTGGAAAGTGGGCTTGATGAGTCAGGAGAAGAACTGTTGGATTGTAAGCAAGAAGAAATGATGGAGGCATTAGATGGTACTGTGGTGGGATCAGACAAAAATAGTGCAATGGTAAAGATTAAGGGTGAAGAAGTAGTTGAAGCTAACATGGTTGTAGGCATCACAGGCGAGACCTTAAATTGGAACATACAGACAATACATGGCTCATCATCATCAGTGGAAGAGGAAAAGAAGGTGGAGACGAAGGCAAAGATATTGCTGAGGCTAAACTACGAGGATGTCATAACTGCTTGGGCAAGTCAAGGTTGTCCTTGGACAACAGGAAACCCACCTCAGTTGAACTCTAATGACTGCTGGCCACACTGCTTGGTAGTTCAAGTTCAATTCCTAATTCAAATTTAA 996 0.4629 MKAATALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASCSKKAISQVWYSGFTRKARTPRHNSKQLLAQKKSKHEEKGAIFNSSILPVVPELGSEEGGLDESDEQFLCRVPEFDPFEDDLCNIYSEVGDERLDVVMKKDDVNGGQDEATCDLDNFSEFLASDMDLAEFAADVESLLESGLDESGEELLDCKQEEMMEALDGTVVGSDKNSAMVKIKGEEVVEANMVVGITGETLNWNIQTIHGSSSSVEEEKKVETKAKILLRLNYEDVITAWASQGCPWTTGNPPQLNSNDCWPHCLVVQVQFLIQI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1899 331 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Prci1g1899 331 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 319 - -
Prci1g1899 331 SMART bboxneu5 10 57 IPR000315 GO:0008270
Prci1g1899 331 CDD Bbox1_BBX-like 14 57 - -
Prci1g1899 331 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1899 Prci-Chr1 39735476 39737974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1899 4 324 C2C2-CO-like Transcription Factor Family AT1G25440 35.897 5.59e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci1g1899 zf-B_box 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1899 - - gmx:100802113 300.056