Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1891 ATGGAGGATGAAAATAATCTGCCTCCAGGATTCAGATTCCATCCCACGGATGAAGAGCTCATAAACTATTACCTCAGAAGCAAAGTTTCTGATAGTGCCTTCACTTCCAAAGCCATATCCGTCGTTGATCTCAACAAGTCTGAACCTTGGGAACTTCCAGGTAAGGCATCGATGGGAGAGAAGGTATGGTATTTCTTTAGTCTAAGAGACAGGAAGTATCCGACAGGACTTCGAACCAACCGAGCAACGGAATCAGGCTACTGGAAAACCACCGGCAAAGACAAACATATCTTTCACGGCGGTGCGTTGGCCGGCTTCAAGAAAACCCTCGTCTTCTACCAGGGAAGAGCTCCTCGTGGTCTCAAAACCAACTGGGTTATTCATGAATATCGCCTGCACGATAAGGAAGATTGGGTTGTTTGCAGGGTGTTCCAGAAAAGCATATCATCAGCATCCAAAAAACCTCGTGATCAGGATATCACATCATCTTCCCAAGTGTCTTTGGATTCACCTTGCGATGCAACCTCAATGGTGAATGAACTGGGCAGCCACGTCGTCCAACTTCCTAATTTTAGTATTGCAAGTTCCTCAACTGGAGGATTCACAGACAACATTAATCACAGCTTTAATGTAAACACAGACATGAACTTGAGCACCAATAATTGGTCATCAGCTGCAACAGATCAAGTTCCCTCTCTTCTTTCATGGCCTAATTGTGCTGCTTCTCGAGGATTAATGCTGAATCCTAATAATCTGTCAGTGAACTCCTTGCTTCTCAAAGCGTTGCAGCTCAAGAGCTATCAGCAAGCCAATGATCACTTTGCGTCGTACATGTCTCATCAAGCAGTTCCCAACCTTGGAGGATCGTCACTCACTGATAATGTAATCTCAAATCCAAGTTCTTCTCATTCCTCCAAAGTCTTAGAATGCTTGCAACTTCAGCAACAGCAGCAACCGTTCAATCTGGACTCCGTTTGGTGA 981 0.4485 MEDENNLPPGFRFHPTDEELINYYLRSKVSDSAFTSKAISVVDLNKSEPWELPGKASMGEKVWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKHIFHGGALAGFKKTLVFYQGRAPRGLKTNWVIHEYRLHDKEDWVVCRVFQKSISSASKKPRDQDITSSSQVSLDSPCDATSMVNELGSHVVQLPNFSIASSSTGGFTDNINHSFNVNTDMNLSTNNWSSAATDQVPSLLSWPNCAASRGLMLNPNNLSVNSLLLKALQLKSYQQANDHFASYMSHQAVPNLGGSSLTDNVISNPSSSHSSKVLECLQLQQQQQPFNLDSVW 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1891 326 SUPERFAMILY NAC domain 4 146 IPR036093 GO:0003677|GO:0006355
Prci1g1891 326 Gene3D NAC domain 16 149 IPR036093 GO:0003677|GO:0006355
Prci1g1891 326 FunFam NAC domain-containing protein 100-like 16 150 - -
Prci1g1891 326 Pfam No apical meristem (NAM) protein 8 132 IPR003441 GO:0003677|GO:0006355
Prci1g1891 326 ProSiteProfiles NAC domain profile. 7 146 IPR003441 GO:0003677|GO:0006355
Prci1g1891 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1891 Prci-Chr1 39678913 39681362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1891 4 326 NAC Transcription Factor Family AT3G18400 50.000 1.34e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g1891 NAM 5.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1891 - - pvu:PHAVU_004G156700g 343.969