Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1884 ATGGCTGAATTCACAACAGATTTTCAAAGCCTTAGACCTTCCTTTCCTTTCTTAGACATTGATCCAAGCTTGGAACTTATGAACCATTTCACAGGCATGATGAGCCCACTTGTCCTGGACAACCTATCTAAATGTTCAGGCATTCCTTTCTCTCAAGACCCTGATTTTCCAGCCAACTTGGATGGAACTTTCCCTTTTTTACCAGCAGAAAACGAAATCCAGGATAGTGAAAAGAGGAAAGCCATTGATCATGTTTCAGAGACCAGTTCTGTAAACCCGGCTCCTGCAGTTTCTGAGAGTGGAAGCAAGAGTTCTGGAAGAGTTAAGAGAGCCAAGAGCAACATAACAGAAGAAGGTAAACCAAAGGAGGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACGGACAGTCACAGTTTAGCAGAAAGGGTCAGAAGGGGGAAAATCAATGAAAAAATAAGACGTTTGCAGACCATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAGTGATGTTAGACGAGATTATAAACTATGTTCAGTCCTTGCAGCATCAGGTGGAGTTTCTATCTATGAAGCTGACTGCAGCAAGTACCTTCTATGATTTCAATTCAGAGACAGATGCTATAGAAACAATGCAGAGAGCAAAGGCATTCAAGGCAAAAGGATTATCCTCAAGAAATGGTGAAGAAGGATACGGTGGGGGGGTCTCTTGCTTTCATCCAACTTGGCCTCTCTGA 741 0.4345 MAEFTTDFQSLRPSFPFLDIDPSLELMNHFTGMMSPLVLDNLXSKCSGIPFSQDPDFPANLDGTFPFLPAENEIQDSEKRKAIDHVSETSSVNPAPAVSESGSKSSGRVKRAKSNITEEGKPKEVVHVRARRGQATDSHSLAERVRRGKINEKIRRLQTIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSETDAIETMQRAKAFKAKGLSSRNGEEGYGGGVSCFHPTWPL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1884 247 Gene3D - 131 202 IPR036638 GO:0046983
Prci1g1884 247 Pfam Helix-loop-helix DNA-binding domain 138 185 IPR011598 GO:0046983
Prci1g1884 247 SMART finulus 140 190 IPR011598 GO:0046983
Prci1g1884 247 MobiDBLite consensus disorder prediction 76 114 - -
Prci1g1884 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 202 IPR036638 GO:0046983
Prci1g1884 247 CDD bHLH_AtBPE_like 124 209 - -
Prci1g1884 247 MobiDBLite consensus disorder prediction 87 110 - -
Prci1g1884 247 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 78 208 IPR024097 GO:0006355
Prci1g1884 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1884 Prci-Chr1 39606982 39608429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1884 1 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.445 3.87e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g1884 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1884 - - gmx:100806942 308.916