Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1883 ATGTCTACTTCAAAGAGTGATAGCAGTAGCAGTGAAGATGATAATGAACTCAGGAGGGGACCTTGGACTCTTGAAGAGGACAATCTGTTAACGCAGTACATCTCTGTTAATGGGGAAGGACGATGGAATTTGCTTGCAAAACTTTCAGGGTTGAAGAGAACTGGGAAGAGTTGCAGATTAAGATGGCTTAATTATCTGAACCCACAGGTAAAGCGAGGAAATTTATCCTCAGAAGAGCAGGTTTTAATCCTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCGAAGATTGCTCAACATCTTCCTGGGAGGACAGACAATGAGATCAAGAACTACTGGAGAACTCGGATTCAGAAACAAGCAAGACACTTGAATATTGACCCAAACAGCACAGAGTTTAAAGAAATCATCAGGCGATTCTGGATGCCAAGGTTGCTGCAGAAAGCAAGAGAAATAGCTTCTCCTCCTGCTGCTGCCATGTCAATCCAAAACCAAACGATTCCTCTGTCTATTGAAAGTGTTTCTCAGTGTTCACAAATAGGGACAGTACCAACACAGATTCCTTGGCAGCGACCTTGTGGGATGAATGAAATAGTAGTTCAAAACAGTTCATGCGTGTCGTCTTCTTCCTCAGAATCATCAAACATCCCAGAAGTGTCTCAGTTTCAAGCCTTAGATAACAGTGACATGATCTCCCTTATGTATGATGGTTACCATGTTAATAACAACAATTATGACATGGAAACATTCAATCTGGGAACAACGGTGGCAGCTGAGGCTATGGCAGGCAACTGGATGAACAACGAAGTTGCATGCAGCCTGTGGGGCATGGACGAACTGTGGCAGTTCAGAAACTTCCAAGAATAA 867 0.4348 MSTSKSDSSSSEDDNELRRGPWTLEEDNLLTQYISVNGEGRWNLLAKLSGLKRTGKSCRLRWLNYLNPQVKRGNLSSEEQVLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLNIDPNSTEFKEIIRRFWMPRLLQKAREIASPPAAAMSIQNQTIPLSIESVSQCSQIGTVPTQIPWQRPCGMNEIVVQNSSCVSSSSSESSNIPEVSQFQALDNSDMISLMYDGYHVNNNNYDMETFNLGTTVAAEAMAGNWMNNEVACSLWGMDELWQFRNFQE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1883 288 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Prci1g1883 288 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Prci1g1883 288 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 224 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci1g1883 288 FunFam Myb transcription factor 19 71 - -
Prci1g1883 288 Gene3D - 76 120 - -
Prci1g1883 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Prci1g1883 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Prci1g1883 288 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Prci1g1883 288 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Prci1g1883 288 CDD SANT 76 115 IPR001005 -
Prci1g1883 288 SMART sant 18 68 IPR001005 -
Prci1g1883 288 SMART sant 71 119 IPR001005 -
Prci1g1883 288 FunFam MYB transcription factor 75 117 - -
Prci1g1883 288 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Prci1g1883 288 CDD SANT 21 66 IPR001005 -
Prci1g1883 288 Gene3D - 19 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1883 Prci-Chr1 39589055 39590809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1883 14 284 MYB Transcription Factor Family AT1G68320 46.595 1.72e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g1883 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1883 K09422 - gmx:778042 366.311