Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1879 ATGATAATGGAATATGGAAGGCTTGGCACCAAATTAACTGATGTGTTTCCACTGCTCATTGAAAAGTTCTCCCTTGAGGAACAGGCGTGTTTAGTTTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCAGTATTTCTTCCATGGCTTTCAGCATCTATATCACCTGATGAATCTCAGGATCTGCGGAAGTGCTTAGGCAAAATAGTGCCACAGGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGGAGAAGTGGTACTCTCACAGTCGAAAGTTGTGTTGATCATTCTCAGTTTCAAGGTTCTTGTTGCCCATTAACACACCAGATTGAGAGAGTAAACTGTGCGTGTGAGTTCACAACCACTGGTAAAAGGAAATATTCTGAATCTAGTCTAGATGTTTCTGATATCAGTGGGACACATCCTATAGATGAAATATTGCTGTGGCATAATTCTATAAAAAAAGAGTTAAGTGAGATAGTGGTGGAGACCAGGAAGATACAGCTCTGCGGAGATTTTACTAACCTATCAGCTTTCAATGAAAGGTTGCAATTTATCTCTGAAGTTTGCATATTTCACAGTATTGCTGAAGACCAGGTTATATTTCCAGCAGTAGATGGTGAATTTTCTTTCTTCCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGAGTTTGATTGAAGCTATTCAGAATGAAGAAGCAACATCTAATTCTGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCAGATAATGGAAACTATACAAAGACATTTCCATAATGAAGAAGTTCAAGTTCTTCCACTTGCCCGGAAGCACTTTAGCTTTAGAAGGCAACGTGAACTTCTATATCAAAGTTTGTGCATGATGCCTCTGAAATTGATTGAACGTGTCCTGCCATGGCTGGTAGGATCATTAACTGAAGATCAAGTGAAGATGTTTTTAAGAAACGTGCAATTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAATGAGGGCTTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGGCTTACTGATATTGAAGAAAATTTTGTCCAATCATCCTGTCCTTGTGGCATTTCAGCACCACCAGCTAGAGATTACTCATTAGTAGTTGAACTAGATGAGAACAAAAGACCAGTTAAGCGAAACATATTGGAGTTGTGCAAGAATGGAGATGTCTATGAAACTTCAGAGTCTGAAAGTATTGAGAAACAATGTTGTAGTGCAAGGTCTTGTTGTGTGCCGGGTTTAGGAGTAAGCAGTAATAATTTGGGGCAAAGCTCTCTTTCTACTGTCAAGTCCTTGCGCTCCTTGTCTTTCAACTCTTCTGCTCCATCTATAAATTCCAGTCTTTTCATATGGGAAACAGACAATAACTCATGTGATAACTCTGCAGAAAGGCCCATTGATACTATATTTAAATTTCACAAAGCTATACGCAAAGATTTGGAGTATTTAGATATTGAATCTGGAAAGCTTAGTCACTGTGATGAGACGATTCTTCGGCAGTTCACTGGAAGATTTCGTCTTTTGTGGGGCCTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCTGCACTGGAATCCAAAGAATCCCTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGACTTTCAGATGACCAGTATGTCGAATGAAAGTAATTTTGAAACTTCTGATATGAGTTTTAGAGATAATAACAGAAAGTACAATGAGCTGGCAACTAAACTTCAAGGGATGTGCAAATCCATTCGAGTGACACTGGATCAGCATATTTTTAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGGACTACAGGTGCAGAAGTACTGCAATCAATGCTACCATGGGTAACTTCTGCACTTACTGAGGATGAACAGAACAAGATGATGGATACATGGAAGCAGGCAACAAAAAATACTATGTTCAATGAATGGCTTAATGACTGCTGGAAAGAAAGTCCAGAAGCTATATTGCCGAAAGAAACACCAGAGCAAGCTGCTTCTCAAAAAGGTACTGAGCATCAGGAAAGCATGGACCTGAACGATCAGATGTTTAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAACGAGCTTGAGTCAGAGATCCGGAAGGTCTATCAAGACTCAACTCTTGATCCAAGAAGAAAAGCATATCTTGTGCAGAATCTAATGACTAGTCGATGGATAGCTGCACAGCAGAAGTTACCTAAAACTACAGCTGGGGATTCTACAGATGGAGAAAAAATTGAAGGACGCTCAGCATCCTTTCAGGACCAGGAGAAACAAATTTTCGGGTGTGAACACTATAAGAGAAATTGCAAACTTAGAGCTGCATGTTGTGGCAAGTTATTTACATGTAGATTTTGCCATGACAATGTGAGCGATCACTCTATGGATAGAAAAGCAACTTCAGAAATGATGTGCATGCGTTGCTTGAATATACAGCCAGTTGGCCCAATATGCATGACGCCTTCATGTAATGGATTTTCAATGGCAAAATATTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTGTATCACTGCCCTTTTTGCAATTTGTGCCGTGTGGGGAGAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAACTGCTGCCTGGGGATAAAATCGGCATCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAATTGCCCAATTTGCTGTGACTTCTTATTCACATCAAGTGCTACAGTCAGAGCTCTACCTTGTGGCCACTATATGCATTCAGCTTGCTTTCAGGCTTACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCTTTACTGGCTGCTGAGGAGCTTCCTGAGGAGTACAGGGACCGTTATCAGGACATACTTTGCAATGACTGTGAACGAAAGGGGTGTTCTCCCTTCCACTGGTTGTATCACAAATGTGAATTTTGTGGCTCATACAATACCCGTGTGATCAAGTCCGAGCCATCAAATTCCCGCTGCTCTTAG 3252 0.4068 MIMEYGRLGTKLTDVFPLLIEKFSLEEQACLVWQFLCSIPVNMMAVFLPWLSASISPDESQDLRKCLGKIVPQEKLLQKVIFTWMEGRSGTLTVESCVDHSQFQGSCCPLTHQIERVNCACEFTTTGKRKYSESSLDVSDISGTHPIDEILLWHNSIKKELSEIVVETRKIQLCGDFTNLSAFNERLQFISEVCIFHSIAEDQVIFPAVDGEFSFFQEHAEEESQFNDFRSLIEAIQNEEATSNSEAEFYSKLCSHADQIMETIQRHFHNEEVQVLPLARKHFSFRRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDQVKMFLRNVQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLTDIEENFVQSSCPCGISAPPARDYSLVVELDENKRPVKRNILELCKNGDVYETSESESIEKQCCSARSCCVPGLGVSSNNLGQSSLSTVKSLRSLSFNSSAPSINSSLFIWETDNNSCDNSAERPIDTIFKFHKAIRKDLEYLDIESGKLSHCDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISCVLSELSVLHEDFQMTSMSNESNFETSDMSFRDNNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNDCWKESPEAILPKETPEQAASQKGTEHQESMDLNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKTTAGDSTDGEKIEGRSASFQDQEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPVGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCERKGCSPFHWLYHKCEFCGSYNTRVIKSEPSNSRCS 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1879 1083 CDD Hr-like 496 653 - -
Prci1g1879 1083 FunFam Zinc finger protein BRUTUS 489 718 - -
Prci1g1879 1083 CDD Hr-like 148 277 - -
Prci1g1879 1083 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 537 1078 - -
Prci1g1879 1083 Gene3D nmb1532 protein domain like 148 295 - -
Prci1g1879 1083 Pfam Hemerythrin HHE cation binding domain 494 654 IPR012312 -
Prci1g1879 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 962 1011 IPR013083 -
Prci1g1879 1083 Pfam Ring finger domain 966 1008 IPR001841 -
Prci1g1879 1083 SMART ring_2 967 1008 IPR001841 -
Prci1g1879 1083 ProSiteProfiles Zinc finger CTCHY-type profile. 903 966 IPR017921 -
Prci1g1879 1083 CDD RING-H2_Pirh2-like 966 1009 - -
Prci1g1879 1083 ProSiteProfiles Zinc finger CHY-type profile. 831 900 IPR008913 GO:0008270
Prci1g1879 1083 FunFam Zinc finger protein-related isoform 1 962 1011 - -
Prci1g1879 1083 Pfam CHY zinc finger 838 913 IPR008913 GO:0008270
Prci1g1879 1083 Pfam Zinc-ribbon 1014 1071 IPR039512 -
Prci1g1879 1083 SUPERFAMILY RING/U-box 964 1019 - -
Prci1g1879 1083 MobiDBLite consensus disorder prediction 807 826 - -
Prci1g1879 1083 ProSiteProfiles Zinc finger RING-type profile. 967 1009 IPR001841 -
Prci1g1879 1083 Gene3D nmb1532 protein domain like 487 727 - -
Prci1g1879 1083 Gene3D - 1038 1078 - -
Prci1g1879 1083 SUPERFAMILY Zinc hairpin stack 904 960 IPR037275 -
Prci1g1879 1083 SUPERFAMILY CHY zinc finger-like 831 894 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1879 Prci-Chr1 39544704 39553257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1879 485 705 C2H2 Transcription Factor Family AT3G18290 30.088 3.91e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1879 K16276 - gmx:100801725 1835.85