Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1878 ATGGCGACGCCGTTGGCTGGACTACAACACTTGGACGGAGGTGGAGGAGTGGCCGTGCTCTCCAATTCTGTGAGCAAGGCCGATTCTTCCTCCTCCACATCCAATGGTGGCTCGAAGTGCTCTGAATTGGGCTCGCCAATTCTAATTTTCTTGTTCTTCCACAAAGCGATTCGGAATGAGCTTGATGCCCTTCACCGATTAGCAATGGCATTTGCCACCGGCAATCGCTCTGATATTCAGCCGCTGTTCGAACGCTATCATTTCCTGAGATCAATTTACAGTCACCATTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTTGACATACGTGTGAAAAATGTAGCAAAGACATATTCCCTTGAACATAAGGGTGAAAGTAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTACTACACATAATAATGAAAGTTTCCTGAGGGAGTTAGCATTCTGCACGGGAGCCCTGCAGACATCAGTTAGTCAACATATGGCTAAGGAAGAGGAGCAGGTGTTTCCACTGCTCATTGAAAAGTTCTCCCTTGAGGAACAGGCGTGTTTAGTTTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCAGTATTTCTTCCATGGCTTTCAGCATCTATATCACCTGATGAATCTCAGGATCTGCGGAAGTGCTTAGGCAAAATAGTGCCACAGGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGGAGAAGTGGTACTCTCACAGTCGAAAGTTGTGTTGATCATTCTCAGTTTCAAGGTTCTTGTTGCCCATTAACACACCAGATTGAGAGAGTAAACTGTGCGTGTGAGTTCACAACCACTGGTAAAAGGAAATATTCTGAATCTAGTCTAGATGTTTCTGATATCAGTGGGACACATCCTATAGATGAAATATTGCTGTGGCATAATTCTATAAAAAAAGAGTTAAGTGAGATAGTGGTGGAGACCAGGAAGATACAGCTCTGCGGAGATTTTACTAACCTATCAGCTTTCAATGAAAGGTTGCAATTTATCTCTGAAGTTTGCATATTTCACAGTATTGCTGAAGACCAGGTTATATTTCCAGCAGTAGATGGTGAATTTTCTTTCTTCCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGAGTTTGATTGAAGCTATTCAGAATGAAGAAGCAACATCTAATTCTGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCAGATAATGGAAACTATACAAAGACATTTCCATAATGAAGAAGTTCAAGTTCTTCCACTTGCCCGGAAGCACTTTAGCTTTAGAAGGCAACGTGAACTTCTATATCAAAGTTTGTGCATGATGCCTCTGAAATTGATTGAACGTGTCCTGCCATGGCTGGTAGGATCATTAACTGAAGATCAAGTGAAGATGTTTTTAAGAAACGTGCAATTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAATGAGGGCTTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGGCTTACTGATATTGAAGAAAATTTTGTCCAATCATCCTGTCCTTGTGGCATTTCAGCACCACCAGCTAGAGATTACTCATTAGTAGTTGAACTAGATGAGAACAAAAGACCAGTTAAGCGAAACATATTGGAGTTGTGCAAGAATGGAGATGTCTATGAAACTTCAGAGTCTGAAAGTATTGAGAAACAATGTTGTAGTGCAAGGTCTTGTTGTGTGCCGGGTTTAGGAGTAAGCAGTAATAATTTGGGGCAAAGCTCTCTTTCTACTGTCAAGTCCTTGCGCTCCTTGTCTTTCAACTCTTCTGCTCCATCTATAAATTCCAGTCTTTTCATATGGGAAACAGACAATAACTCATGTGATAACTCTGCAGAAAGGCCCATTGATACTATATTTAAATTTCACAAAGCTATACGCAAAGATTTGGAGTATTTAGATATTGAATCTGGAAAGCTTAGTCACTGTGATGAGACGATTCTTCGGCAGTTCACTGGAAGATTTCGTCTTTTGTGGGGCCTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCTGCACTGGAATCCAAAGAATCCCTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGACTTTCAGATGACCAGTATGTCGAATGAAAGTAATTTTGAAACTTCTGATATGAGTTTTAGAGATAATAACAGAAAGTACAATGAGCTGGCAACTAAACTTCAAGGGATGTGCAAATCCATTCGAGTGACACTGGATCAGCATATTTTTAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGGACTACAGGTGCAGAAGTACTGCAATCAATGCTACCATGGGTAACTTCTGCACTTACTGAGGATGAACAGAACAAGATGATGGATACATGGAAGCAGGCAACAAAAAATACTATGTTCAATGAATGGCTTAATGACTGCTGGAAAGAAAGTCCAGAAGCTATATTGCCGAAAGAAACACCAGAGCAAGCTGCTTCTCAAAAAGGTACTGAGCATCAGGAAAGCATGGACCTGAACGATCAGATGTTTAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAACGAGCTTGAGTCAGAGATCCGGAAGGTCTATCAAGACTCAACTCTTGATCCAAGAAGAAAAGCATATCTTGTGCAGAATCTAATGACTAGTCGATGGATAGCTGCACAGCAGAAGTTACCTAAAACTACAGCTGGGGATTCTACAGATGGAGAAAAAATTGAAGGACGCTCAGCATCCTTTCAGGACCAGGAGAAACAAATTTTCGGGTGTGAACACTATAAGAGAAATTGCAAACTTAGAGCTGCATGTTGTGGCAAGTTATTTACATGTAGATTTTGCCATGACAATGTGAGCGATCACTCTATGGATAGAAAAGCAACTTCAGAAATGATGTGCATGCGTTGCTTGAATATACAGCCAGTTGGCCCAATATGCATGACGCCTTCATGTAATGGATTTTCAATGGCAAAATATTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTGTATCACTGCCCTTTTTGCAATTTGTGCCGTGTGGGGAGAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAACTGCTGCCTGGGGATAAAATCGGCATCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAATTGCCCAATTTGCTGTGACTTCTTATTCACATCAAGTGCTACAGTCAGAGCTCTACCTTGTGGCCACTATATGCATTCAGCTTGCTTTCAGGCTTACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCTTTACTGGCTGCTGAGGAGCTTCCTGAGGAGTACAGGGACCGTTATCAGGACATACTTTGCAATGACTGTGAACGAAAGGGGTGTTCTCCCTTCCACTGGTTGTATCACAAATGTGAATTTTGTGGCTCATACAATACCCGTGTGATCAAGTCCGAGCCATCAAATTCCCGCTGCTCTTAG 3726 0.4147 MATPLAGLQHLDGGGGVAVLSNSVSKADSSSSTSNGGSKCSELGSPILIFLFFHKAIRNELDALHRLAMAFATGNRSDIQPLFERYHFLRSIYSHHSNAEDEVIFPALDIRVKNVAKTYSLEHKGESNLFDHLFELLNSTTHNNESFLRELAFCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQACLVWQFLCSIPVNMMAVFLPWLSASISPDESQDLRKCLGKIVPQEKLLQKVIFTWMEGRSGTLTVESCVDHSQFQGSCCPLTHQIERVNCACEFTTTGKRKYSESSLDVSDISGTHPIDEILLWHNSIKKELSEIVVETRKIQLCGDFTNLSAFNERLQFISEVCIFHSIAEDQVIFPAVDGEFSFFQEHAEEESQFNDFRSLIEAIQNEEATSNSEAEFYSKLCSHADQIMETIQRHFHNEEVQVLPLARKHFSFRRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDQVKMFLRNVQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLTDIEENFVQSSCPCGISAPPARDYSLVVELDENKRPVKRNILELCKNGDVYETSESESIEKQCCSARSCCVPGLGVSSNNLGQSSLSTVKSLRSLSFNSSAPSINSSLFIWETDNNSCDNSAERPIDTIFKFHKAIRKDLEYLDIESGKLSHCDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISCVLSELSVLHEDFQMTSMSNESNFETSDMSFRDNNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNDCWKESPEAILPKETPEQAASQKGTEHQESMDLNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKTTAGDSTDGEKIEGRSASFQDQEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPVGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCERKGCSPFHWLYHKCEFCGSYNTRVIKSEPSNSRCS 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1878 1241 FunFam Zinc finger protein-related isoform 1 1120 1169 - -
Prci1g1878 1241 ProSiteProfiles Zinc finger CHY-type profile. 989 1058 IPR008913 GO:0008270
Prci1g1878 1241 SUPERFAMILY RING/U-box 1122 1177 - -
Prci1g1878 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1121 1169 IPR013083 -
Prci1g1878 1241 CDD RING-H2_Pirh2-like 1124 1167 - -
Prci1g1878 1241 CDD Hr-like 654 811 - -
Prci1g1878 1241 Gene3D nmb1532 protein domain like 645 885 - -
Prci1g1878 1241 Pfam CHY zinc finger 996 1071 IPR008913 GO:0008270
Prci1g1878 1241 CDD Hr-like 306 435 - -
Prci1g1878 1241 MobiDBLite consensus disorder prediction 965 984 - -
Prci1g1878 1241 Gene3D nmb1532 protein domain like 44 194 - -
Prci1g1878 1241 Gene3D nmb1532 protein domain like 306 453 - -
Prci1g1878 1241 Gene3D - 1196 1236 - -
Prci1g1878 1241 CDD Hr-like 49 175 - -
Prci1g1878 1241 SUPERFAMILY Zinc hairpin stack 1062 1118 IPR037275 -
Prci1g1878 1241 FunFam Zinc finger protein BRUTUS 647 876 - -
Prci1g1878 1241 ProSiteProfiles Zinc finger RING-type profile. 1125 1167 IPR001841 -
Prci1g1878 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1061 1124 IPR017921 -
Prci1g1878 1241 SUPERFAMILY CHY zinc finger-like 989 1052 IPR037274 GO:0008270
Prci1g1878 1241 SMART ring_2 1125 1166 IPR001841 -
Prci1g1878 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1236 - -
Prci1g1878 1241 Pfam Hemerythrin HHE cation binding domain 51 177 IPR012312 -
Prci1g1878 1241 Pfam Hemerythrin HHE cation binding domain 652 812 IPR012312 -
Prci1g1878 1241 Pfam Ring finger domain 1124 1166 IPR001841 -
Prci1g1878 1241 Pfam Zinc-ribbon 1172 1229 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1878 Prci-Chr1 39542573 39553257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1878 1 1241 C2H2 Transcription Factor Family AT3G18290 67.883 0.0 1713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1878 K16276 - gmx:100801725 2074.29