Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1873 ATGGATAATCATCCTATCCGTTTTCTTACATCCATAGTTATCATCACCTTCTTCTCCATAGCTTTGCCACAAGCCTACTCTCAGCAAAATGAAACATACTCTGTTTGCAGCCAATCATACAGTTGTGGATCTCTCACAAACATTTCCTACCCTTTCTGGGGACACAACCGACGCAGTTTTTGTGGCAGAAATGGCTTCCAGCTCGTATGCCTGAATGATCAGAACACTACAATTCAAGCTGGCTCACAAACTTTCAATGTTCTGCAGATTAACCAGACTGGCTTTACCATGCGACTTGTGCTACCAGAATCAGACTATGATCTTTGTCCTCCCAATATTACCAACACTTCTCTGCATGGCAGTCCCTTTAGTTTTCAACCTACAGTTCAAAACATCACTGTATTCTACGACTGCCCCTCCCAGGTTTCGGGTGCGAACAACTTAACGTGCCAGAATAATTCTACTAAGCACGCTTTCTTCGTGAATGGAACCCAGTTGCAGCAATTTTCAGGACTTGACAGCTGCGGGTATCGTGTTCAAGTGCCGGTTTCAGTGGATAGTACCTCGGATTCGCTCGAGAATGCTCTGGATGAAGGGTTTGAAGTGAAGTTTGAAGCCTCTGAGTGTGCAACATGCAAGGATTCTGGAGGCATATGTGGAACGAATCAGCAGAGTAATAGCTCTGTGTTTTCGTGTTATTGTCGCGATGGAACAAGCCATGACACAGCCTGTTCTGCTAGCAGCAGTAGCAGTAAAAGAAACAAAGTATTGAAGTTAGTTTTAGGTTTTGTAGCTACTGGAATTGGATTACCTCTCATAGCAGTCATCATATGCCGAAACAAAGCTAAAATATGGAGGTTCATAACAACCCGCGTTGGCAACAAGAGGATGGATCGAAAAATTGAAGCCTTCCTTCAAAGTCAGGGCCCTCTGGCTCTGGAAAGATACAGCTTCTGTGATTTGAAGAAAATGACAGACTCATTCAAAGTTAAACTTGGAGAAGGAGGCTACGGTGCTGTTTACAAAGGCAACCTACTCAATGGTTGTCCCGTAGCAGTAAAACTCTTGCACGAATCAACTGGGGATGGCGAAGAATTCGTCAACGAGGTTGCTAGCATCAGCAAAACCTCTCATGTTAATATCGTCACCCTGCTTGGATTTTGCTTAGAAGGACGCAGAAAAGCCCTTATCTTTGAGTTCATGTCCAATGGTTCTCTTGAAAAGTTCATTTCCAATAAGAAAACAGACGAAACTGTTGCATCATTGAGTTGGGAGACTTTATATCAGATTGCCAAAGGAATAGCTCGAGGACTAGAATACCTGCACAAGGGATGCAACACTCGGATCTTGCATTTCGATATAAAACCACATAACATCCTTCTGGACGAAAAGTATCGTCCAAAGATCTCAGATTTCGGACTTGCTAAGCTCAATAACAATGAAGAGAGCATTATTTCCGTATCAAATGCCAGAGGGACAGTCGGGTATGTAGCTCCAGAAGTGTGGAACAAAAACATCGGAGGAGTTTCACATAAATCTGATGTATATAGCTACGGAATGATGCTGTTGGAAATGGCTGGAGGACAGAAGAAGGATAACAGTGAATCTGAAGAAAGCAATAATGGGTCAGGGAGCGAGGTGTATTTCCCTCCATTGAAGATTTACAAGAAGCTTGAAGAAGGAAGTGATGTTGTGGGAGTGGTTAAAGGTGTGATAAGCGTGGAGGAGAATGAGATTGCGAAGAAGATGACAATGGTGGGACTGTGGTGTATTCAGACAATTCCTGCTCAGAGACCAACCATGAGCAGAGTCATTGAAATGTTGGAAGGTAGTACGGATACTCTCGAAATGCCACCAAAGCCTTTCACGTCTTCGACATCAACGTCTGAATCTTCCTTTGTAATGGGTTCATTTCAGAGTAGTGTCTGA 1929 0.4339 MDNHPIRFLTSIVIITFFSIALPQAYSQQNETYSVCSQSYSCGSLTNISYPFWGHNRRSFCGRNGFQLVCLNDQNTTIQAGSQTFNVLQINQTGFTMRLVLPESDYDLCPPNITNTSLHGSPFSFQPTVQNITVFYDCPSQVSGANNLTCQNNSTKHAFFVNGTQLQQFSGLDSCGYRVQVPVSVDSTSDSLENALDEGFEVKFEASECATCKDSGGICGTNQQSNSSVFSCYCRDGTSHDTACSASSSSSKRNKVLKLVLGFVATGIGLPLIAVIICRNKAKIWRFITTRVGNKRMDRKIEAFLQSQGPLALERYSFCDLKKMTDSFKVKLGEGGYGAVYKGNLLNGCPVAVKLLHESTGDGEEFVNEVASISKTSHVNIVTLLGFCLEGRRKALIFEFMSNGSLEKFISNKKTDETVASLSWETLYQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDEKYRPKISDFGLAKLNNNEESIISVSNARGTVGYVAPEVWNKNIGGVSHKSDVYSYGMMLLEMAGGQKKDNSESEESNNGSGSEVYFPPLKIYKKLEEGSDVVGVVKGVISVEENEIAKKMTMVGLWCIQTIPAQRPTMSRVIEMLEGSTDTLEMPPKPFTSSTSTSESSFVMGSFQSSV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1873 642 MobiDBLite consensus disorder prediction 613 642 - -
Prci1g1873 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Prci1g1873 642 Pfam Wall-associated receptor kinase C-terminal 150 237 IPR032872 -
Prci1g1873 642 Gene3D Transferase(Phosphotransferase) domain 1 401 620 - -
Prci1g1873 642 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Prci1g1873 642 Pfam Protein kinase domain 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1873 642 PANTHER RUST RESISTANCE KINASE LR10-RELATED 296 627 IPR045874 GO:0004672
Prci1g1873 642 Pfam Wall-associated receptor kinase galacturonan-binding 36 100 IPR025287 GO:0030247
Prci1g1873 642 SMART serkin_6 326 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1873 642 SUPERFAMILY Protein kinase-like (PK-like) 307 609 IPR011009 -
Prci1g1873 642 FunFam PR5-like receptor kinase 401 620 - -
Prci1g1873 642 ProSiteProfiles Protein kinase domain profile. 326 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1873 642 MobiDBLite consensus disorder prediction 617 642 - -
Prci1g1873 642 Gene3D Phosphorylase Kinase; domain 1 302 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1873 Prci-Chr1 39465270 39467640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1873 15 621 Receptor kinase-like Gene Family AT5G38260 41.812 5.37e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Prci1g1873 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1873 - - vra:106766588 815.839