Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1865 ATGACCCAAAACAACCTCTATTCAATCTTCATCTTCTCCTATTTGTTCGTCAGAGTCAGATTTTGTTCATCTCTTAACCTAAATTTTAAAGCTTGTCAGCCCACTACCTGCGGTAACCTAACCATAAGCTACCCTTTTTACATCGAAGGCCGACAAAAATCCTTTAGTGGAGGCTCGGGTGTCGGCCTTTCTTGTTCCGATAATGGCCTTCCCATCCTCAATATCTTCGGCATCCAGTACTTCATCCATGAAATTTCCTACACCAACCAGTCAATTCGAGTGTCGGAAGCTGCAACCTTGTCGTCAAACAGCAATTCATGTGTGATTCCTCGTATTCACAACATATCCCTTGACGTAACCAGATTCAGTTTCGCTCCGAACCAGATGGACCTATTCCTGATGTTCGAATGCAACCTGGAGTCGCTGCCAGAATATTTTTCCAAGTACAGGATTGGGTGTTCTGCACAAAACGAAGCGACGTCCGTTCTGGCCATAACAGAGGAGGGTGAGGATTTGAGGTCGGCGTCTGAGAAATGTATCGGTGGGGTGGCGACAACGAAAGTGGAAAAGAATTCCAATATTGATGGACAAGTCATGAGAAGAGGGTTTCTCTTGAATTACTATAATGACGCGGAATGCAGTTCATGTCAGGAGACCGGATGGAAATGTGGCTTCAACGGGGACCCTGAAGGTTGCATTTTCAAATGCTATTGCCCAGACAGTGATCCTGATTTGAAATGTGGATCCGAATCCGGACTCGGACATGCGTTCGCCAACAAAATTATAGTAGTTGCAGAAAATCCATCGCCGGTGATAGAAAATTCACGGCCTGGCAGGATGAAACTTACAATAGGCATAACAAGTGGAACAATTGGTGGAACATTGCTAATATGCAGTATTATTTTTTGTTGTAAAATCAAATCACTGAGGCAGAAAATAGAGTTCTTTAAGACATCAAGGGCTGACCAAAACATCGAGGCATTCATTAGAAACCAAGGACCTCTAGCTCTTACAAGATATAAATTTGCGGAGGTGAAGAAAATGACCAAATCTTTTCAAGTTAAGTTGGGACAAGGTGGTTATGGTGCTGTATACAAAGGAGAACTACTCAATGGTTGTCCTGTTGCTGTCAAGTTATTAAAGTCATCAAAAGGGAACGGGGAAGAATTTATCAATGAGGTTGCTAGCATCAGCAGAACTTCCCATGTCAATGTTGTCACCCTCCTTGGATTTTGTTTGGAAGGACACAAAAAGGCTCTCATATACGAGTTCATGTCCAATGGATCTCTTGACAAATTTATTCATGATAAGGTAGATAAAACCAGTCCATCTTTGACTTGGGAAAATTTGTACCACATTGCAATTGGAACAGCTCGAGGGCTTGAATACTTGTATAAAGGATGTAACCCACGAATTCTGCATTTTGACATAAAGCCACATAATATTCTTTTAGATGAAAGCTTTTATCCTAAGATCTCAAATTTTGGGCTTGCAAAGTTGTATCCAAGGAAAGAAAGCATCATTTCAATTACAGAAGCTAGAGGAACCATAGGATATCTTGCTCCGGAAGTTTGGAATAGAAATATAGGAGGAATTTCACATAAATCTGATGTTTACAGTTATGGAATGATGCTATTAGATATGGTTGGAGGACGAAAGAACATGAATGATGAAGCCAATTGCACAACTGAGATTTATTTTCCAGATTGGATTTTTGAGAAACTTGAGGAAGGCAGCAATTTGGGAGATGATGGGGCCAACGCCATGGAAGAAAATGATATTGCAAGGAGAATGACGATTGTGGGTTTGTGGTGTACTCAAACATTTCCGACTCAAAGACCTACAATTAGTAGAGTTATTGAAATGTTAGAAGGAAGCTTGGATTCTCTTCCAATGCCACCAAAGCCTGTCATGCCTTCCCCTCCAGCAAGATTAGAACTTGAATCTTCCTCAACTGCAAACACAGAGAAACTCGATCTCGAAAGCTCTTCCCTAATGCTAGAGAGACACTAG 2013 0.4138 MTQNNLYSIFIFSYLFVRVRFCSSLNLNFKACQPTTCGNLTISYPFYIEGRQKSFSGGSGVGLSCSDNGLPILNIFGIQYFIHEISYTNQSIRVSEAATLSSNSNSCVIPRIHNISLDVTRFSFAPNQMDLFLMFECNLESLPEYFSKYRIGCSAQNEATSVLAITEEGEDLRSASEKCIGGVATTKVEKNSNIDGQVMRRGFLLNYYNDAECSSCQETGWKCGFNGDPEGCIFKCYCPDSDPDLKCGSESGLGHAFANKIIVVAENPSPVIENSRPGRMKLTIGITSGTIGGTLLICSIIFCCKIKSLRQKIEFFKTSRADQNIEAFIRNQGPLALTRYKFAEVKKMTKSFQVKLGQGGYGAVYKGELLNGCPVAVKLLKSSKGNGEEFINEVASISRTSHVNVVTLLGFCLEGHKKALIYEFMSNGSLDKFIHDKVDKTSPSLTWENLYHIAIGTARGLEYLYKGCNPRILHFDIKPHNILLDESFYPKISNFGLAKLYPRKESIISITEARGTIGYLAPEVWNRNIGGISHKSDVYSYGMMLLDMVGGRKNMNDEANCTTEIYFPDWIFEKLEEGSNLGDDGANAMEENDIARRMTIVGLWCTQTFPTQRPTISRVIEMLEGSLDSLPMPPKPVMPSPPARLELESSSTANTEKLDLESSSLMLERH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1865 670 SMART serkin_6 350 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1865 670 MobiDBLite consensus disorder prediction 627 670 - -
Prci1g1865 670 SUPERFAMILY Protein kinase-like (PK-like) 334 624 IPR011009 -
Prci1g1865 670 MobiDBLite consensus disorder prediction 645 661 - -
Prci1g1865 670 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Prci1g1865 670 Gene3D Transferase(Phosphotransferase) domain 1 425 629 - -
Prci1g1865 670 ProSiteProfiles Protein kinase domain profile. 350 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1865 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Prci1g1865 670 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Prci1g1865 670 PANTHER RUST RESISTANCE KINASE LR10-RELATED 320 648 IPR045874 GO:0004672
Prci1g1865 670 Pfam Wall-associated receptor kinase C-terminal 187 240 IPR032872 -
Prci1g1865 670 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Prci1g1865 670 FunFam PR5-like receptor kinase 425 635 - -
Prci1g1865 670 Pfam Protein tyrosine and serine/threonine kinase 352 623 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1865 Prci-Chr1 39149642 39168823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1865 1 651 Receptor kinase-like Gene Family AT1G66910 37.936 1.01e-131 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Prci1g1865 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1865 - - pcin:129304394 1334.32