Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1858 ATGTCAAAACCCATGTACATCATTGCTGCTCTCTCCTTCTTGTGCCTCAGGCACCGTATTGCCGATGCATATTCTTCTGTATGTTCCTCTCCTCCTGCTTGCGGCAATGTTTCCGTTCACTATCCTTTCTGGCTGGACAACACTTCCGCCCAAGAATACTGTGGTTACCCTGATTTTGGTCTCAAATGCTCCGATGATGGACCACCCGTTATCACTCTTCCAAGCGACACATACTATGTCACAGATATAAATTACTACCTTTCCACACTCACGCTTGTTGACACGGATGTGGTGAACCAATCCTGCCCCAGAGCACGCCAGAATGTTAGCCTAGAAAACACCCCTCTGAGTATTAATCATTTGGATTTGAACCTCAGTTTCTACTTCAACTGCAGTGTTTCTAATAATAATTATAACATCCCTGCCACCAACACCATAGGGTGTTTGAAAAATGAAGGATCGAAGCAGTCATATGTGTTTGAGACGGGGAGTGAGACGGACGGTTATGAGTGGAATATAGATTGTACAGAGAAGGTGGTGGTGGTGGTGAAGGAGGAAGAGATCAGAAGCATGGACTTGGTAACTGGGTTTGGTGGGGCCATGAACCAAGGGTTTGTGCTTGATTGGGGAAAAGCTAGAGATTGCATGGTGTGTGAGAATTCTGGAGGATATTGTGGCTTCAACCGAACCACCCAGCAGAGGCTGTGCTTTTGCAAAGATGGCAGTATCGCTACCAAAAGCTGCAACAAAGAGAAATTTTCATTGAAAAACAAAGTCATTGTAGGTGCTGTTACTGCTGCATTCGTTGCGATTGTCATGCTCACGGGCTTCTTTTTCTATCAACGTCGAAAGAAGACCAGTTATGCAAAGTCATACATGCAATCACATGCCACTTCTTCTGTTTCATCCATGACAGTGGACCCTGAGATTAATGCAAGTAAATATTTTGGAGTCCCCGTCTTCACATACACTGAACTTGAAGAGGCCACTAACAATTTCGATGAAGCCAGAGAACTTGGAGATGGAGGTTTTGGAACTGTATACTTCGGAAAACTTCGGGACGGTCGCTGTGTTGCGGTGAAGAGATTGTACGAGAACAATTACAAGAGAGTAGAGCAATTCATTAACGAAGTTCAGATCCTGACACGCTTGCGCCACACAAACCTTGTGTCCCTCTATGGCTGCACCTCTCGGCACAGTCGTGAGCTCCTCCTCGTATATGAGTACATTCCCAATGGAACAGTCGCCGATCATCTTCATGGCGATCGAGCAAAGCCAGGCTCACTGCCTTGGAATATCAGAATGAACATAGCCATTGAAACTGCAAGTGCTTTGGCATACCTTCATGCCTCAGACATCATCCATCGTGACGTGAAAACCAACAATATCCTTTTGGACAACCATTTTGTTGTCAAAGTTGCAGACTTTGGACTCTCCCGTCTCTTCCCAGACCATGTCACTCATGTTTCCACAGCCCCACAAGGAACTCCAGGCTATGTCGACCCGGAGTACCATGAGTGTTATAAGCTCACTGACAAAAGTGATGTGTATAGTTTCGGTGTAGTGCTGATTGAGCTGATATCATCTTTGCCAGCTGTGGACATTACGCGGCATCGACATGAGATCAATCTGTCCACCATGGCAATCAACAAGATCCAGAACCGGGCACTGCACGAGCTGGTGGATCCTACGCTTGGGTTTGAGTCAGATCAGAAGGTGAGGAAGATGATTAATGCTGTGGCGGAGCTGGCGTTTCAGTGTTTGCAGAATTTGAAGGATATGAGGCCTTCAATGGAGGAAGTGCTAGAAACGCTGAGGGATATAGAGAGTGATGGGAAGCATAAGAGTAAGCCAGAGGTGATGGATATTTCTGATGATGTTGGGTTGCTCAAGAATGATCTGCCTCCACCTTCATCTGATTCTAATTTGGCAAGCAAGTCTACGACTTCAAATTCTAGCAGTTGA 1965 0.459 MSKPMYIIAALSFLCLRHRIADAYSSVCSSPPACGNVSVHYPFWLDNTSAQEYCGYPDFGLKCSDDGPPVITLPSDTYYVTDINYYLSTLTLVDTDVVNQSCPRARQNVSLENTPLSINHLDLNLSFYFNCSVSNNNYNIPATNTIGCLKNEGSKQSYVFETGSETDGYEWNIDCTEKVVVVVKEEEIRSMDLVTGFGGAMNQGFVLDWGKARDCMVCENSGGYCGFNRTTQQRLCFCKDGSIATKSCNKEKFSLKNKVIVGAVTAAFVAIVMLTGFFFYQRRKKTSYAKSYMQSHATSSVSSMTVDPEINASKYFGVPVFTYTELEEATNNFDEARELGDGGFGTVYFGKLRDGRCVAVKRLYENNYKRVEQFINEVQILTRLRHTNLVSLYGCTSRHSRELLLVYEYIPNGTVADHLHGDRAKPGSLPWNIRMNIAIETASALAYLHASDIIHRDVKTNNILLDNHFVVKVADFGLSRLFPDHVTHVSTAPQGTPGYVDPEYHECYKLTDKSDVYSFGVVLIELISSLPAVDITRHRHEINLSTMAINKIQNRALHELVDPTLGFESDQKVRKMINAVAELAFQCLQNLKDMRPSMEEVLETLRDIESDGKHKSKPEVMDISDDVGLLKNDLPPPSSDSNLASKSTTSNSSS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1858 654 SMART serkin_6 333 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1858 654 MobiDBLite consensus disorder prediction 609 626 - -
Prci1g1858 654 ProSiteProfiles Protein kinase domain profile. 333 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1858 654 MobiDBLite consensus disorder prediction 635 654 - -
Prci1g1858 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Prci1g1858 654 MobiDBLite consensus disorder prediction 609 654 - -
Prci1g1858 654 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Prci1g1858 654 Pfam Wall-associated receptor kinase C-terminal 148 241 IPR032872 -
Prci1g1858 654 Gene3D Transferase(Phosphotransferase) domain 1 410 621 - -
Prci1g1858 654 Pfam Protein kinase domain 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g1858 654 FunFam Wall-associated receptor kinase-like 20 410 618 - -
Prci1g1858 654 Pfam Wall-associated receptor kinase galacturonan-binding 28 94 IPR025287 GO:0030247
Prci1g1858 654 Gene3D Phosphorylase Kinase; domain 1 304 409 - -
Prci1g1858 654 SUPERFAMILY Protein kinase-like (PK-like) 312 605 IPR011009 -
Prci1g1858 654 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 652 IPR044652 GO:0004672
Prci1g1858 654 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 305 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1858 Prci-Chr1 39073283 39086809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1858 34 654 Receptor kinase-like Gene Family AT1G25390 44.892 2.23e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Prci1g1858 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1858 - - qlo:115964068 741.495