Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1806 ATGAGAAGGCCTTCCTCTCAGAAGCCATCATCATCGGACTCTCAGAAACGGTCGTGGTCCAAGGAAGAAGACCAGAAACTTATTGATTACATTCAGAAACATGGTGAAGGTTGCTGGCCTTCCCTCCCACAGGCCGCAGGGTTGCGTCGGTGCGGCAAAAGCTGTAGATTGAGATGGTTAAATTATCTGAAACCAGACATCAAACGAGGAGACTTTGGAGAAGATGAAGAGGACTTAATCATCAGGCTTCATGCTCTTCTTGGCAACCGGTGGTCACTGATAGCTGGAAGACTACCAGGAAGAACTGATAACGAGGTGAAGAATTACTGGAACTCACACATAAGAAAGAAGCTTATTCAGATGGGTCATCGTGATCCCAACAATCCTCGTCATCATCGCTTTAACGTTGGATCTGTAAAATCTGAACCTTCGAATTCTGTCAACAATAATATCGAGGATCATAAGGTATTAGAGCCAACAAGCAAGCCCGAGTTCAACCTCAATGCTTTTCCTGACTTGAATCTCGATCTCACACTCACTGCTTATTGCTACTCTGGTGATGATCGTTGA 570 0.4491 MRRPSSQKPSSSDSQKRSWSKEEDQKLIDYIQKHGEGCWPSLPQAAGLRRCGKSCRLRWLNYLKPDIKRGDFGEDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLIQMGHRDPNNPRHHRFNVGSVKSEPSNSVNNNIEDHKVLEPTSKPEFNLNAFPDLNLDLTLTAYCYSGDDR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1806 189 FunFam MYB-related transcription factor 15 68 - -
Prci1g1806 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Prci1g1806 189 MobiDBLite consensus disorder prediction 1 22 - -
Prci1g1806 189 SMART sant 68 116 IPR001005 -
Prci1g1806 189 SMART sant 15 65 IPR001005 -
Prci1g1806 189 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Prci1g1806 189 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Prci1g1806 189 Gene3D - 71 137 - -
Prci1g1806 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 143 - -
Prci1g1806 189 CDD SANT 74 114 IPR001005 -
Prci1g1806 189 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Prci1g1806 189 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Prci1g1806 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Prci1g1806 189 CDD SANT 18 63 IPR001005 -
Prci1g1806 189 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Prci1g1806 189 Gene3D - 16 68 - -
Prci1g1806 189 FunFam MYB transcription factor 70 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1806 Prci-Chr1 38393443 38395760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1806 2 180 MYB Transcription Factor Family AT4G38620 48.309 4.24e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g1806 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1806 K09422 - egr:104422134 233.802