Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1802 ATGGACCCTTCCTCGATCCCTCCTCCTTCGTCCACCTTTCCAGCTGCCATCTCTCTCTTCCCTGTCAACTATGCTCCTGTTCCGGCCTCCACCACCGCCACCGCGGCCGCCGTCGCACCCGTCGCGAATTCGGCTCCGGCCGTCGATTCTTCTGATGCAGTTACCACCCAGCCTGCTGCTCCGAGTTCGAACCACCCTCCCTATTCTGAGATGATTTATGCAGCAATTGAGGCGCTGAAGGAGAAAAATGGGTCTAGCAAGAGGGCTATTGCGAAATACATAGAGCACGCATACCCTAATCTCCCACCGACTCACCCTGCTTTGTTGACCTACCACCTTCAGCGCTTAAAGAACAATGGACTCCTTGTTATGGTCAAAAAGTCTTATAAGCTTCCTAGATCTGACGGTTCTCCGTCTACTGCGCAGAGAGGACGTGGCAGACCGCCGAAGCTGAAGCCTCAGCCGCAGGCCCAACTCCTGGCTCAGGCTCAGGGCCAGCCTCACGCTCTGGCTTCGGCTCAGCCAGAGCAGCAGCCGGAGTCTGTATCCAACGCGCCAAAAAATCTGCAAAATGCGGAGCCAGTTTGGGTTGCCCTAGGGCTTGCTGATGAGCCCACGGAAGTGAAGAAACGAGGCCCGGGCCGTCCTCGCAAGAGTGCCGTGGCAGAGGCAGTTGGTCTACCTGGAACGGCTGCTCGGAGGGGCCGTCCGCCGGGAACTGGGAGATCTAGGTTGCCAAAGAGGCCTGGCCGTCCTCCTAAGCCGAAATCTGTGATGGCAATCTCTAATGGGATAAAGCGTCGACCTGGTAGGCCGCCCAAAATCCAATCTAAGCCTACAGTTATTCCCTTCGCCGCTCCGGCCTCTGCTCCCCAAGCGCCTACTTCACTCCCCGCTCAAGAAGGAACTGTGCCGGATGCTACTGGGCCAATTCTCGCTCCTAGGCGTAGAGGACGCCCGAAGAAGTATGGAGTGCAAGCTCCTGGAGTCGCTTCTCAATCTTTTATTGGCCGTGGCCGTGGCCGTGGGCGAGGACGTGGGCGCGGTGTCTACCGTAGCTCTACTGGAAGACCTGTTGGTCGGCCTAGGAAGGGAACAACCCCTGTTTCTGCTGCTGCACAAAAAGCTGCTAATGAAGAGTTCAAGAGGAAACTTGAATATTTTCAATCCAAAGTGAAGGAATCTCTTGCTGTGATTAAGCCTCATTTCAACCATGAAAGCCCTGTCACTGCTATTGCAGCAATTCAAGATTTAGAAATACTGGCTACCCTGGACCTTAATGCACCGTTCAATGATGATGCACAGTCAGCGCAGCAACTTCCTCAAGTGCAAGTTCAGCCACAGCCACCACCGCAGCAATCAGAACAGCCGGAGTTTCAACCACAGCAAATGCCACCACCGCAGCTGTACCAACATCAGTTGCCACAGTCTCATGTCTTTCCTCAGGCATTTCAGCAGCCACAGATTTTCCAGCAGCAACTACCGCAGCCTCAGCTTTATCAACAGCCAATGCAGCATGTACCATTGCAGTCGCAGCAGCCGCAATTGTTTCAGCCACATGCATGA 1566 0.5485 MDPSSIPPPSSTFPAAISLFPVNYAPVPASTTATAAAVAPVANSAPAVDSSDAVTTQPAAPSSNHPPYSEMIYAAIEALKEKNGSSKRAIAKYIEHAYPNLPPTHPALLTYHLQRLKNNGLLVMVKKSYKLPRSDGSPSTAQRGRGRPPKLKPQPQAQLLAQAQGQPHALASAQPEQQPESVSNAPKNLQNAEPVWVALGLADEPTEVKKRGPGRPRKSAVAEAVGLPGTAARRGRPPGTGRSRLPKRPGRPPKPKSVMAISNGIKRRPGRPPKIQSKPTVIPFAAPASAPQAPTSLPAQEGTVPDATGPILAPRRRGRPKKYGVQAPGVASQSFIGRGRGRGRGRGRGVYRSSTGRPVGRPRKGTTPVSAAAQKAANEEFKRKLEYFQSKVKESLAVIKPHFNHESPVTAIAAIQDLEILATLDLNAPFNDDAQSAQQLPQVQVQPQPPPQQSEQPEFQPQQMPPPQLYQHQLPQSHVFPQAFQQPQIFQQQLPQPQLYQQPMQHVPLQSQQPQLFQPHA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1802 521 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 64 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g1802 521 MobiDBLite consensus disorder prediction 204 369 - -
Prci1g1802 521 CDD H15 62 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g1802 521 PANTHER HISTONE H1 48 276 - -
Prci1g1802 521 MobiDBLite consensus disorder prediction 47 67 - -
Prci1g1802 521 PRINTS Histone H5 signature 206 225 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g1802 521 PRINTS Histone H5 signature 51 72 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g1802 521 PRINTS Histone H5 signature 78 95 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci1g1802 521 SUPERFAMILY "Winged helix" DNA-binding domain 61 138 IPR036390 -
Prci1g1802 521 Gene3D - 61 142 IPR036388 -
Prci1g1802 521 SMART AT_hook_2 356 368 IPR017956 GO:0003677
Prci1g1802 521 SMART AT_hook_2 231 243 IPR017956 GO:0003677
Prci1g1802 521 SMART AT_hook_2 314 326 IPR017956 GO:0003677
Prci1g1802 521 SMART AT_hook_2 266 278 IPR017956 GO:0003677
Prci1g1802 521 SMART AT_hook_2 210 222 IPR017956 GO:0003677
Prci1g1802 521 SMART AT_hook_2 142 154 IPR017956 GO:0003677
Prci1g1802 521 FunFam Histone H1.2 61 141 - -
Prci1g1802 521 PRINTS AT-hook-like domain signature 312 323 IPR017956 GO:0003677
Prci1g1802 521 PRINTS AT-hook-like domain signature 354 364 IPR017956 GO:0003677
Prci1g1802 521 PRINTS AT-hook-like domain signature 142 152 IPR017956 GO:0003677
Prci1g1802 521 MobiDBLite consensus disorder prediction 435 477 - -
Prci1g1802 521 MobiDBLite consensus disorder prediction 157 186 - -
Prci1g1802 521 MobiDBLite consensus disorder prediction 494 521 - -
Prci1g1802 521 Pfam linker histone H1 and H5 family 65 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g1802 521 MobiDBLite consensus disorder prediction 129 186 - -
Prci1g1802 521 MobiDBLite consensus disorder prediction 48 64 - -
Prci1g1802 521 SMART h15plus2 62 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci1g1802 521 MobiDBLite consensus disorder prediction 444 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1802 Prci-Chr1 38292042 38298217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1802 49 146 Single Myb Histone (SMH) Gene Family AT1G49950 35.577 2.62e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1802 - - pcin:129310438 749.969