Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1746 ATGAGCTTGCAAGTCCGACAAGAAAGAAGGGATCGGTCCAGGGTTCCTGCCCCAGGTCCTCGTCAGGAATGGGTTCCTAGAGCATCTGTCCCCACCACCACCCCGAATTTCCCACCATCAAATTACCCTTTGGATCAAAATGGTAATGCTGGTTGCTCAAATAATAATGTTGCTCCACCAGCAAATCGGCATAGAAGCAGTCACGGGTCAAGGGGTCACGTTAATCAGCCTATGAATCATAGAAGGGAAAGGGAAAAAGGACGAAACGAGAATCAGGTGGTGAAAGGAGAAAGGGACTCTAATTTGCCTCAACTGTTACAAGAGATCCAGGATAAGCTTATGAAAAGTATTGTGGAATGCATGATTTGCTATGACATGGTCCGTAGGTCTGCACCCATCTGGTCTTGCTCAAGCTGCTACTCAATCTTTCACCTGAATTGTATAAAGAAGTGGGCTCGAGCGCCTACTTCTGTTGATGTGTCTGCAGAAAAGAATCAAGGATTTAATTGGCGGTGCCCTGGTTGTCAGTCTGTACAACTTACGTCATCAAGGGAGATTAGGTATGTCTGCTTTTGTGGAAAGAGGCCAGACCCACCATCTGATCTGTATCTGATACCACATTCTTGTGGAGAACCATGTGGCAAGCCTCTTGAGAGGGAAGCGTTGGTTAATGGAGGGAGAGGGAGCAGGGAAGATCATTGCCCTCATGTTTGTGTTTTGCAATGCCATCCAGGCCCATGTCCTCCATGTAAAGCATTTGCACCGCCGCGTTTGTGTCCTTGTGGGAAGAAAACTATTACCACACGGTGCTCTGATCGGTCCTCTGTTCTTACTTGTGGTCAACTCTGTGATAAGCTTCTTGACTGTGGGCGTCATCAGTGTCAACGCATTTGCCATGTGGGTCCATGTGATCCATGTCAGGTTCTAATCAATGCCTCTTGTTTCTGCAACCAGAAGGCAGAGGTTGTTCTTTGTGGAGACATGGCTGTGAAGGGTGAAATTAAAGCTGAAGGTGGTGTATTTTCTTGTGGTTCCAATTGTGGGAAGAAGCTTAGTTGTGGTAATCATGTCTGCAATGACATTTGTCATCCAGGCAGCTGTGGTGAGTGTGAATTCTTACCAAGCCAGATTAAGACATGCTTTTGTGGGAAGACAAAATTGGAGGAGGAGCGACATAGTTGTCTAGATCCAATACCAACCTGTTCACAAGCATGTGACAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGAGGGGCATGTCATTCTGGGGATTGTTCACCATGTTCAGTTCTAGTCTCCCAAAAGTGTCGGTGTGGTTCAACTTCTCGAACTGTGGAGTGCTATAAGACAATGAGGGAGAATGAGGCATTCACTTGTGAAAGATCTTGTGGGCGCAAAAAAAACTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAGTAATCGTCTAAATGGGGAGTGGGATCCTCACTTTTGTACCATGCCATGTGGAAAGAAGCTAAGGTGTGGGCAACATGCATGTGAATCCCTATGTCACAGTGGCCATTGTCCACCTTGTCTTGAGACTATCTTCGCTGATTTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCATTGCCTTGCGGTACACCCCCTCCTTCATGTCAACTTCCATGTTCAATTCCTCAACCTTGTGGCCATTCAGCCTCCCACAGCTGCCACTATGGAGATTGCCCACCTTGCTCAGTGCCTGTGGCAAAAGAATGTATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGATCAAAGGATATTAGATGTAATAAACTCTGTGGGAAGACCAGACAATGTGGTTTACATGCTTGTGGCAGAACATGTCACCCTCCACCTTGTGATATTCCATCTAGTAGTGACCAAGGTCTCCGAGTTTCTTGTGGTCAAACATGCGGTGCTCCAAGGAGAGATTGCAGGCATACATGTACAGCTGCATGTCACCCTTCAGCACCATGCCCTGATATAAGATGTGAGTACTCTGTTACAATTACTTGTTCTTGCGGTCGTGCAACAGCAAATGTTCCTTGTGGTGCTGGTGGTGCTAGTGGTAATTATAACATGGATTCCATACATGAAGCTTCCATAATTCAAAAGTTGCCTGTGCCACTTCAACCTGTGGAAAACAGCAAACTCATTCCCCTTGGACAAAGAAAGCTTACATGTGATGATGATTGTGCTAAGCTGGAGCGTAAAAGGGTTCTTGCTGATGCTTTTGACGTCAACCCTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCTACTACTAATGAATTGCTTTCAGACATGCTCAGGCGTGATCCTAAGTGGGTTTTCTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAGAGCAGAGGAGCAACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGGTTATTGCTGATAGATGGAAGTTGGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGTTTTGTCATAGTTCATGTTACCCAAAAGTCAAAGGCTCCTCCCCGGGTGCTTGGGGTTAAAGGTACAGCAACGGTAAATGCAACCTTGCCTCCACAATTTGATCCCTTAGTAGACATGGATCCCCGTCTTGTTGTTTCCTTTCCAGACCTACCAAGAGAAGCCGATATAAGTGCTTTAGTATTGAGGTTTGGCGGTGAATGTGAACTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTCTTCCATGATCCTAGCCGAGCTGCGACTGCAATGAGGAGGTTGGATCATGGAACAGCTTATCATGGGGCTGTGGTGGCCGTGCCAAATGCTGGGTCATCAGCTACATCTGTTGCTACAAATGCATGGGGAGGACTCGGGATGGTGAAAGAAGGAGGAGCGCTGGCAGCATTGAAGGGGAATCCATGGAAAAAGGCCGTGGTTCAAGAGCCTGTCTGGAGAGAAGATTCTTGGGGTGATGAAGAATGGACTGATGGTTCTGCTAACCTCCAGCCTTCTGTCTGGGCGAGAGAAACTCCTAAAGTCCCAATCACAGCTTCATTAAATCGATGGAGTGTCTTAGACCAAGAATCATCTTCAAGTTCATCTGTTGCGACCATTGGAACTGATGTTTCTCGGAAACACTCAGCAAGTTCATCTTCTGTTCCAAGGATGGAATCTGAATCCAGCGGATCTGTTCCAGGACAGCATGAAGAGAATGCTAATGCATCAGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA 3315 0.4621 MSLQVRQERRDRSRVPAPGPRQEWVPRASVPTTTPNFPPSNYPLDQNGNAGCSNNNVAPPANRHRSSHGSRGHVNQPMNHRREREKGRNENQVVKGERDSNLPQLLQEIQDKLMKSIVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSREIRYVCFCGKRPDPPSDLYLIPHSCGEPCGKPLEREALVNGGRGSREDHCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRSSVLTCGQLCDKLLDCGRHQCQRICHVGPCDPCQVLINASCFCNQKAEVVLCGDMAVKGEIKAEGGVFSCGSNCGKKLSCGNHVCNDICHPGSCGECEFLPSQIKTCFCGKTKLEEERHSCLDPIPTCSQACDKPLPCGLHHCRGACHSGDCSPCSVLVSQKCRCGSTSRTVECYKTMRENEAFTCERSCGRKKNCGRHRCSERCCPLSNPSNRLNGEWDPHFCTMPCGKKLRCGQHACESLCHSGHCPPCLETIFADLTCACGRTSIPPPLPCGTPPPSCQLPCSIPQPCGHSASHSCHYGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDIPSSSDQGLRVSCGQTCGAPRRDCRHTCTAACHPSAPCPDIRCEYSVTITCSCGRATANVPCGAGGASGNYNMDSIHEASIIQKLPVPLQPVENSKLIPLGQRKLTCDDDCAKLERKRVLADAFDVNPPNLDSLHFGENSTTNELLSDMLRRDPKWVFSVEERCKFLVLGKSRGATHGLKVHVFCPMLKDKRDAVRVIADRWKLAVNAAGWEPKRFVIVHVTQKSKAPPRVLGVKGTATVNATLPPQFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPSRAATAMRRLDHGTAYHGAVVAVPNAGSSATSVATNAWGGLGMVKEGGALAALKGNPWKKAVVQEPVWREDSWGDEEWTDGSANLQPSVWARETPKVPITASLNRWSVLDQESSSSSSVATIGTDVSRKHSASSSSVPRMESESSGSVPGQHEENANASEVSEVVDDWEKAYE 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1746 1104 CDD NF-X1-zinc-finger 343 388 - -
Prci1g1746 1104 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 63 1007 IPR034078 GO:0003700
Prci1g1746 1104 MobiDBLite consensus disorder prediction 1 17 - -
Prci1g1746 1104 CDD NF-X1-zinc-finger 497 540 - -
Prci1g1746 1104 SMART znfxneu3 353 372 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 507 526 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 469 499 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 656 677 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 617 647 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 234 252 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 564 582 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 SMART znfxneu3 411 430 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 MobiDBLite consensus disorder prediction 1045 1104 - -
Prci1g1746 1104 Pfam NF-X1 type zinc finger 649 674 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 236 251 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 507 524 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 353 370 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 411 429 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 289 307 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 469 480 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 564 581 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 Pfam NF-X1 type zinc finger 617 632 IPR000967 GO:0005634|GO:0008270
Prci1g1746 1104 CDD NF-X1-zinc-finger 279 327 - -
Prci1g1746 1104 ProSiteProfiles Zinc finger PHD-type profile. 117 178 IPR019787 -
Prci1g1746 1104 MobiDBLite consensus disorder prediction 1045 1089 - -
Prci1g1746 1104 MobiDBLite consensus disorder prediction 39 63 - -
Prci1g1746 1104 CDD NF-X1-zinc-finger 554 602 - -
Prci1g1746 1104 MobiDBLite consensus disorder prediction 1 97 - -
Prci1g1746 1104 CDD NF-X1-zinc-finger 209 272 - -
Prci1g1746 1104 ProSiteProfiles Zinc finger RING-type profile. 120 176 IPR001841 -
Prci1g1746 1104 CDD RING-CH-C4HC3_NFX1-like 119 176 - -
Prci1g1746 1104 CDD NF-X1-zinc-finger 401 449 - -
Prci1g1746 1104 MobiDBLite consensus disorder prediction 76 95 - -
Prci1g1746 1104 SUPERFAMILY RING/U-box 119 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1746 Prci-Chr1 37616067 37620236 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Prci1g1746 zf-NF-X1 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1746 K12236 - qsa:O6P43_005222 1809.27