Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1g1738 | ATGGAGTTCGGCTTCTTCAGAGGCTTGCCCGAGGAGATCTTCCTCCTGGACATTGCCGGCCAATTTGCTTTCCTCGTCGATATCGTCATCCGATTTTTCCTCACTTACCGTGATACCTCCTCCTCCAATTCCTGGGTCTTCGATCACCGTAAAATCGCGAAGAGGTACTTGAAGTCACGGTTCACGCCCGATTTTCTGAGTTGTTTGCCCTGGGATTATATTTACAAGGCTGCTGGCAGGAAAGAGCCAGTGAGGTATCTTCTATGGATCAGGCTATGGCGAGCATTTAGAGTGACTGAATTTTTTGAGAAGCTGGAGAAAGATATGAGGATCAATTACCGCTGTACTAGAATTGTGAAACTTCTTGTTGTTGAACTCTATTGCACACATACGGCTGCCTGCATCTTCTACTATCTTGCTACCACTTTGCCCCCTTCTAAGGAAGGTTATACATGGATAGGCAGCTTGAAGATGGGTGACTACAGCTATTCGGACTTCAGACATATTAGTCTTTGGAGGCGTTATGTGACATCACTCTACTTTGCAATAGTTACCATGGTAACTGTTGGCTTTGGAGAAATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGATATTTGTTTCCTCTGACATGATTCTGGCTGCTTATCTTTTTGGTAACATGACAGCATTGGTCGTGAAAGGATCAAGAACAGAGAAGTTTAGGGACAAAATGTCTGAACTTATCAAGTACATGAATAAAAGAAAATTGGATAAGCAGATAACTAAGGAGATTGGAGGCCATTTGCGCTTACAATATGACCGCAGAGACACTGAGGCCGCTATTGATGAAGATGTTCCAGTTTCTATCCGCACAAAGGCAATCAATGTCCATGAGGAGTTTTTCCTCCCAGGAGAAGTTATTATGGAGAAAGGAGATTTAGTAGATCAACTTTACCTTGTATGCCATGGTGAGCTGGAAGAGCTAAGAATGGAAGATGATGAACGAGAAGAGCTGGTTAAGCAAGATCAAACCTACAGTTCCTTTGGCGAGGTTTCCTTTCTTTGCAATTTGCCTCAAACTTACATGGTTCGCGCTCGTGAATTTTGCAAAGTTCTGCGCCTAGATAAGCTATCCTTTACAGAAATATTCAAAACATACTTCCTAGATGGCCGGGTTATCTTGCAAAATCTTCTTGAGGGAAAAGACTGTGCTCTTCAGCATGAGATTTTGGAATCAGGCTTCACCTTGACAATTGGAAATCGTGAAACAGAACTGGCTGTGAGGATTAATTGTGCTGCCTATGAGGGGGATTTCTATCTTTTGAAACATTGGATTGAATCAGGACTAGATCCCAACAAAACTGATTATGATGGAAGATCACCTTTGCATATTTCTGCATCTAAAGGATATGTAGATATTGCTTGCTTTCTTGTTGACAAAGGAGTGAATATTGATTTATCAGATAAGTTTGGGAATACTCCATTGTTTGAAGCCATAAAGAATGGACATGAAGAAGTAGCTTCTTTACTTGTAAATAAGGGGGCTATTCTTACCATTGAAGATGCTGGAAGTTTTCTATGCATGACTGCTGCAACGAAGGAACTGGACCTTTTAAGAAAGCTTTTAGCCCATGGTATAGATCCAAATTCTAGAAATTACGATCAACGAACAGCTCTTCATATAGCTGCCTCGGAGGGTTTGTTCACCGTTGCTGAAACGCTCATAGAAGCAGGAGCAAGTGTTTTATCAACGGACAGGTGGGGATATACGCCACTTGATGATGCTCGCATAGGTGGAAATAGGAACATGATCAAATTGCTTGAAGTAGCAAAAATTTCTCAGCTTTCTGAGATATCAGATAGTATTCAGGAAACACAAGGTAAGCATTCTGACATTGCTACTTGGACTAAGATAGCAGAAACACATCTTTCACCATCAAGAGATGGAAGTCCGAAAAAGAAATGCACTGTATTTCCTTTCCACCCATGGGATCTCAAAGAGGATGGAAGAGAAAGAGCTGTCCTTTGGGTTCCTGGCAGCATTGAAGAGCTAATAAAGATGGCAAGAGAACAATTAAAATTTCCCAAAGGTTCCCGCATTTTATCTCAGCATGGTGGTAGAATTCTTGATGTTGACATGATTAACAATGATGAGCAGCTATTTCTAACAAGTGAACCTCACATTGAGGAGCAAGGAATTGAAGACTGTTGTGGTCATCCATCCAAATGA | 2217 | 0.4141 | MEFGFFRGLPEEIFLLDIAGQFAFLVDIVIRFFLTYRDTSSSNSWVFDHRKIAKRYLKSRFTPDFLSCLPWDYIYKAAGRKEPVRYLLWIRLWRAFRVTEFFEKLEKDMRINYRCTRIVKLLVVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLKMGDYSYSDFRHISLWRRYVTSLYFAIVTMVTVGFGEIHAVNVREMIFVMIFVSSDMILAAYLFGNMTALVVKGSRTEKFRDKMSELIKYMNKRKLDKQITKEIGGHLRLQYDRRDTEAAIDEDVPVSIRTKAINVHEEFFLPGEVIMEKGDLVDQLYLVCHGELEELRMEDDEREELVKQDQTYSSFGEVSFLCNLPQTYMVRAREFCKVLRLDKLSFTEIFKTYFLDGRVILQNLLEGKDCALQHEILESGFTLTIGNRETELAVRINCAAYEGDFYLLKHWIESGLDPNKTDYDGRSPLHISASKGYVDIACFLVDKGVNIDLSDKFGNTPLFEAIKNGHEEVASLLVNKGAILTIEDAGSFLCMTAATKELDLLRKLLAHGIDPNSRNYDQRTALHIAASEGLFTVAETLIEAGASVLSTDRWGYTPLDDARIGGNRNMIKLLEVAKISQLSEISDSIQETQGKHSDIATWTKIAETHLSPSRDGSPKKKCTVFPFHPWDLKEDGRERAVLWVPGSIEELIKMAREQLKFPKGSRILSQHGGRILDVDMINNDEQLFLTSEPHIEEQGIEDCCGHPSK | 738 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1g1738 | 738 | ProSiteProfiles | Ankyrin repeat region circular profile. | 550 | 582 | - | - | |
| Prci1g1738 | 738 | SUPERFAMILY | Ankyrin repeat | 425 | 603 | IPR036770 | - | |
| Prci1g1738 | 738 | ProSiteProfiles | Ankyrin repeat profile. | 486 | 518 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | Gene3D | - | 414 | 518 | IPR036770 | - | |
| Prci1g1738 | 738 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 292 | 396 | IPR000595 | - | |
| Prci1g1738 | 738 | ProSiteProfiles | KHA domain profile. | 650 | 736 | IPR021789 | - | |
| Prci1g1738 | 738 | SUPERFAMILY | Voltage-gated potassium channels | 11 | 228 | - | - | |
| Prci1g1738 | 738 | Gene3D | - | 519 | 613 | IPR036770 | - | |
| Prci1g1738 | 738 | ProSiteProfiles | Ankyrin repeat profile. | 453 | 485 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | CDD | CAP_ED | 292 | 390 | IPR000595 | - | |
| Prci1g1738 | 738 | SMART | ANK_2a | 583 | 612 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | SMART | ANK_2a | 420 | 449 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | SMART | ANK_2a | 453 | 482 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | SMART | ANK_2a | 550 | 579 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | SMART | ANK_2a | 517 | 546 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | SMART | ANK_2a | 486 | 515 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | Pfam | Ankyrin repeats (many copies) | 537 | 589 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | Pfam | KHA, dimerisation domain of potassium ion channel | 649 | 718 | IPR021789 | - | |
| Prci1g1738 | 738 | PANTHER | POTASSIUM CHANNEL AKT1 | 1 | 289 | IPR045319 | GO:0005249|GO:0006813 | |
| Prci1g1738 | 738 | SUPERFAMILY | cAMP-binding domain-like | 231 | 394 | IPR018490 | - | |
| Prci1g1738 | 738 | ProSiteProfiles | Ankyrin repeat region circular profile. | 453 | 485 | - | - | |
| Prci1g1738 | 738 | Pfam | Ankyrin repeats (3 copies) | 427 | 516 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | SMART | cnmp_10 | 277 | 394 | IPR000595 | - | |
| Prci1g1738 | 738 | Gene3D | - | 3 | 228 | - | - | |
| Prci1g1738 | 738 | ProSiteProfiles | Ankyrin repeat profile. | 550 | 582 | IPR002110 | GO:0005515 | |
| Prci1g1738 | 738 | Pfam | Ion transport protein | 15 | 226 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Prci1g1738 | 738 | Gene3D | Jelly Rolls | 283 | 404 | IPR014710 | - | |
| Prci1g1738 | 738 | PRINTS | EAG/ELK/ERG potassium channel family signature | 17 | 27 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci1g1738 | 738 | PRINTS | EAG/ELK/ERG potassium channel family signature | 28 | 37 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci1g1738 | 738 | PRINTS | EAG/ELK/ERG potassium channel family signature | 127 | 137 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci1g1738 | 738 | PRINTS | EAG/ELK/ERG potassium channel family signature | 219 | 228 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci1g1738 | 738 | PRINTS | EAG/ELK/ERG potassium channel family signature | 175 | 192 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Prci1g1738 | 738 | ProSiteProfiles | Ankyrin repeat region circular profile. | 486 | 517 | - | - | |
| Prci1g1738 | 738 | Pfam | Cyclic nucleotide-binding domain | 296 | 382 | IPR000595 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci1g1738 | Prci-Chr1 | 37508219 | 37516661 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1g1738 | 1 | 582 | Ion Channels | AT5G37500 | 55.943 | 0.0 | 722 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1g1738 | K21867 | - | cave:132185413 | 962.214 |