Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1722 ATGGAAGGAGGAGGAGCAGATCACAGTAACTCATCGAACTCTATCTACAGAGAGTGTCTGCGAAACCATGCAGCCAGTCTCGGCAGCTATGCCACCGACGGTTGTGGCGAGTTCACGCTCGACGAGAGCTCTCCGGGAGGGTGTCTCCAATGCGCCGCCTGTGGGTGCCACCGGAACTTCCACCGAAAGTTGACGTGCCCACTGCCTCCGAGGGGCTTTAGCCGGCCGGAGCTGATGACTGGGGAACTGATGGAGTACAGCGGTGGTGAGGGGACGCCGCCGAGCAGCGGGATGGTGGAAGGCGGGGAGAGGATGACGACGACGTCGTCGGGGAAGAAGAGGTTCAGGACCAAGTTCACGGCGGAGCAGAAGGAAAAGATGATGGGATTTGCAGAGAAGCTTGGATGGAAGCTTCAGAGGAAGGATCTAGACGATGAGATAGAGAGGTTCTGCAGAGGCGTGGGAGTGAGCCGCCAAGTGTTCAAGGTTTGGATGCATAACCATAAGAACGCTTCTTCTTCTTCTTCTGCTTCCACTGGCAATGCCTCTTCTCTTACCCAGTAA 564 0.5656 MEGGGADHSNSSNSIYRECLRNHAASLGSYATDGCGEFTLDESSPGGCLQCAACGCHRNFHRKLTCPLPPRGFSRPELMTGELMEYSGGEGTPPSSGMVEGGERMTTTSSGKKRFRTKFTAEQKEKMMGFAEKLGWKLQRKDLDDEIERFCRGVGVSRQVFKVWMHNHKNASSSSSASTGNASSLTQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1722 187 MobiDBLite consensus disorder prediction 87 112 - -
Prci1g1722 187 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 16 63 IPR006456 -
Prci1g1722 187 NCBIfam homeobox domain, ZF-HD class 112 170 IPR006455 -
Prci1g1722 187 Gene3D - 99 176 - -
Prci1g1722 187 MobiDBLite consensus disorder prediction 167 187 - -
Prci1g1722 187 Pfam ZF-HD protein dimerisation region 15 64 IPR006456 -
Prci1g1722 187 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 64 IPR006456 -
Prci1g1722 187 SUPERFAMILY Homeodomain-like 103 170 IPR009057 -
Prci1g1722 187 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 170 - -
Prci1g1722 187 FunFam Zinc-finger homeodomain protein 2 100 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1722 Prci-Chr1 37186104 37186907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1722 16 171 ZF-HD Transcription Factor Family AT4G24660 45.882 9.84e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci1g1722 ZF-HD_dimer 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1722 - - jre:109020973 253.832