Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1721 ATGTCATCAGTTCCAACCTCGGAGCAGTTTTCCAGCGCCGAGAATGGCACTAGCACTACAAACAAAAGAAAGAGACGACCCGCAGGAACACCAGATCCAGATGCTGAGGTGGTGTCTCTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTTCAGAGGGACCAGAACCTTCAGATGCACAGGAGGAGACACAAGGTTCCGTGGAAGCTGCTCAAGAGAGAGACGCCGGTGGTGAAGAAGAGGGTGTTCGTGTGCCCGGAGCCGACCTGCTTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTTCGCCGGAAACACAGCAACCACAAGCAATGGGTCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCAATCCGACTACAAGGCGCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGCGATTGCGGCCGAGTCTTCTCCAGGGTGGAGAGCTTCATTGAACACCAAGATGCGTGCAATATGGGTCGACTCCGATCGGAGGCGGCGCAGCCGCTGCAACCGGCATGTCTATCTCGGACCGCGTCGAGCCCCAGCCCGTCAAGCGAGACCAATTTCAGCGCTGGTCCAGCATGGCCTCCGCCGCCCGGTCTGATGATCCCAAAGCCAACTCCCGAACCCACATTCTTCCAGAACAATAACCCTATTATTGCCGATAAAACCTCGTGCAAGACCAACAATCAAAACAGCAACAAGCTCTACCCGAACTTGGACCTTCAGCTCTCAACCGCCACGCCCAACACCGACGTCGTCGTCGCGAGAGACGAGACCCACTCGACCCAGCTACAGCTCTCCATTGGGTCGTCGGACGTGAGCGATAAGAACGAGTCGAATAAGAATTCGTCTCCGAAGGAGAGCAGTAACAGCAGCGACAAGCCGCCGGGTGCGGTGGCGGCGCTGATGGTGGAGAAGGCGTACGCGGAGGAGGCGAGGAAAGAAGCCAAGAGACAGATGGAGGCGGCGGAGCAAGAATTCGCTAACGCCCGCAGAATAAGGCAGCAAGCTCAAGCTGAACTGGACAAAGCTTATGCGTTGAAAGAGCAGGCGATTAAGCAGATCAATTCTACCATGCTTCAGATCACTTGTCATGCTTGTAAGCAACAGTTTCAACAGCAAGCGCAAAAGTTATTAATAACCAAAGGTGGTGGCCAAGTATTAGACAACAATAACGGGAAGGAAAAAAACCACTAA 1260 0.5532 MSSVPTSEQFSSAENGTSTTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSEAAQPLQPACLSRTASSPSPSSETNFSAGPAWPPPPGLMIPKPTPEPTFFQNNNPIIADKTSCKTNNQNSNKLYPNLDLQLSTATPNTDVVVARDETHSTQLQLSIGSSDVSDKNESNKNSSPKESSNSSDKPPGAVAALMVEKAYAEEARKEAKRQMEAAEQEFANARRIRQQAQAELDKAYALKEQAIKQINSTMLQITCHACKQQFQQQAQKLLITKGGGQVLDNNNGKEKNH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1721 419 MobiDBLite consensus disorder prediction 192 229 - -
Prci1g1721 419 SMART c2h2final6 92 122 IPR013087 -
Prci1g1721 419 SMART c2h2final6 51 73 IPR013087 -
Prci1g1721 419 SMART c2h2final6 128 155 IPR013087 -
Prci1g1721 419 Coils Coil 320 375 - -
Prci1g1721 419 MobiDBLite consensus disorder prediction 1 39 - -
Prci1g1721 419 MobiDBLite consensus disorder prediction 282 316 - -
Prci1g1721 419 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Prci1g1721 419 Gene3D Classic Zinc Finger 39 124 - -
Prci1g1721 419 SUPERFAMILY beta-beta-alpha zinc fingers 48 74 IPR036236 -
Prci1g1721 419 MobiDBLite consensus disorder prediction 192 211 - -
Prci1g1721 419 MobiDBLite consensus disorder prediction 212 226 - -
Prci1g1721 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Prci1g1721 419 MobiDBLite consensus disorder prediction 282 317 - -
Prci1g1721 419 MobiDBLite consensus disorder prediction 1 18 - -
Prci1g1721 419 FunFam protein indeterminate-domain 12-like 30 98 - -
Prci1g1721 419 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 389 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1721 Prci-Chr1 37159493 37162340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1721 14 396 C2H2 Transcription Factor Family AT2G01940 58.354 3.22e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g1721 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1721 K25871 - gmx:100800187 538.88