Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1677 ATGGAGATGCAGAATCAAAAAGAGAGCACAAAGTCAAACAACTGTGGCATGGCCAGTAGCTGCCTTCCAGACGGCAGCACAAAATCTGAAACTGTTATCTGTAAGAAGGATGTGACTATAACTACTACAGGAGACAATTTTACTCCCAAGGCAAGGAAACCATATACCATTACCAAGCAAAGGGAAAAGTGGACCGAGGAAGAGCATCAGAAGTTCCTTGAAGCTTTGAAACTGTATGGCCGTGGTTGGCGTCAAATTGAAGAACATGTAGGTACCAAAACTGCAGTTCAAATTCGAAGCCATGCACAGAAGTTCTTCTCTAAGGTTGTGCGGGAATCTGATGGTAGCACTGAAAGTTCTGTAAAGCCAATTGACATACCTCCTCCTCGGCCAAAAAGGAAACCATTGCATCCATATCCACGCAAATCTGCTGACTCGTTCAAAGGACATTCAAATGAGTCAGAAAGATCTCCATCGCCAAACATGTCAGCTGCAGTGAAAGACACCCAATCTCCAACTTCAGTGTTATCTGCATTTGGTTCAGAAGCATTCGGATCAGCATTCTCTGAACAGACGAATAGATGTCCTTCCCCTAATTCTTGCACTACTGACATCCACTCGATCCACTTATCTCCAGTCGGAAAGGAAAATGATTGTATTACGTCCATTTCGTCTGAGGAACAGACGGGATATTTAGCTTCTGTCCCTTCAATTGCTGATTTGAAGAAAGATCTCTCCCTGAAGGTTGAGTTGACTTCAGAGAAAAACGAGAATTCTACTGAAGATGATACCAAAATGCCACAGGTCACAAGCATTAAACTTTTTGGAAGAACTGTCTCCTTGACAAATAATCAGACGTCAGTGAATATAGATGAGGACAGAATTCAGTCAGTTATATGTAAGGAAAACACTTGCTCTGTTGAGTCAGGATTTGATGATTCTTTACCAAGCTGGAACTTACACCAAAGTCTTCCAGACTTCGACCTTGGGCTGCGAAACAAAATTTTTAATCTTGCACCTCATCATACCTCCCTCAAAGAGAGAGTGATTGAGAAGGAAAGTCATTGTATAGATTATAACACTGAATCAGTTAGTGAAATGGAAAATGGAGACAAGTTGGATGCTTTTGATTCTCAATGTCAATCATCCCACCATCAGGGAAGAACCTCCTCCAAATCTCCACGAGGGTTCATGCCATATAAAAGATGTTTAGCTGAGAGAGATGTGAATGCGTTTGTTGATGGATTGGAAAAGAGGAAGGCGCAACGAACTCGAGTGTGCTCATAG 1287 0.4211 MEMQNQKESTKSNNCGMASSCLPDGSTKSETVICKKDVTITTTGDNFTPKARKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESDGSTESSVKPIDIPPPRPKRKPLHPYPRKSADSFKGHSNESERSPSPNMSAAVKDTQSPTSVLSAFGSEAFGSAFSEQTNRCPSPNSCTTDIHSIHLSPVGKENDCITSISSEEQTGYLASVPSIADLKKDLSLKVELTSEKNENSTEDDTKMPQVTSIKLFGRTVSLTNNQTSVNIDEDRIQSVICKENTCSVESGFDDSLPSWNLHQSLPDFDLGLRNKIFNLAPHHTSLKERVIEKESHCIDYNTESVSEMENGDKLDAFDSQCQSSHHQGRTSSKSPRGFMPYKRCLAERDVNAFVDGLEKRKAQRTRVCS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1677 428 Gene3D - 63 110 - -
Prci1g1677 428 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Prci1g1677 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Prci1g1677 428 PANTHER SWI/SNF COMPLEX-RELATED 22 327 - -
Prci1g1677 428 MobiDBLite consensus disorder prediction 153 171 - -
Prci1g1677 428 SMART sant 60 108 IPR001005 -
Prci1g1677 428 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Prci1g1677 428 MobiDBLite consensus disorder prediction 127 152 - -
Prci1g1677 428 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Prci1g1677 428 CDD SANT 63 106 IPR001005 -
Prci1g1677 428 MobiDBLite consensus disorder prediction 109 171 - -
Prci1g1677 428 SUPERFAMILY Homeodomain-like 55 109 IPR009057 -
Prci1g1677 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Prci1g1677 428 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Prci1g1677 428 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1677 Prci-Chr1 36518175 36521776 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci1g1677 Myb_DNA-binding 7.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1677 - - pcin:129319842 837.795