Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1675 ATGGAGATGCAGAATCAAAAAGAGAGCACAAAGTCAAACAACTGTGGCATGGCCAGTAGCTGCCTTCCAGACGGCAGCACAAAATCTGAAACTGTTATCTGTAAGAAGGATGTGACTATAACTACTACAGGAGACAATTTTACTCCCAAGGCAAGGAAACCATATACCATTACCAAGCAAAGGGAAAAGTGGACCGAGGAAGAGCATCAGAAGTTCCTTGAAGCTTTGAAACTGTATGGCCGTGGTTGGCGTCAAATTGAAGAACATGTAGGTACCAAAACTGCAGTTCAAATTCGAAGCCATGCACAGAAGTTCTTCTCTAAGTTGTTTCAGGTTGTGCGGGAATCTGATGGTAGCACTGAAAGTTCTGTAAAGCCAATTGACATACCTCCTCCTCGGCCAAAAAGGAAACCATTGCATCCATATCCACGCAAATCTGCTGACTCGTTCAAAGGACATTCAAATGAGTCAGAAAGATCTCCATCGCCAAACATGTCAGCTGCAGTGAAAGACACCCAATCTCCAACTTCAGTGTTATCTGCATTTGGTTCAGAAGCATTCGGATCAGCATTCTCTGAACAGACGAATAGATGTCCTTCCCCTAATTCTTGCACTACTGACATCCACTCGATCCACTTATCTCCAGTCGGAAAGGAAAATGATTGTATTACGTCCATTTCGTCTGAGGAACAGACGGGATATTTAGCTTCTGTCCCTTCAATTGCTGATTTGAAGAAAGATCTCTCCCTGAAGGTTGAGTTGACTTCAGAGAAAAACGAGAATTCTACTGAAGATGATACCAAAATGCCACAGGTCACAAGCATTAAACTTTTTGGAAGAACTGTCTCCTTGACAAATAATCAGACGTCAGTGAATATAGATGAGGACAGAATTCAGTCAGTTATATGTAAGGAAAACACTTGCTCTGTTGAGTCAGGATTTGATGATTCTTTACCAAGCTGGAACTTACACCAAAGTCTTCCAGACTTCGACCTTGGGCTGCGAAACAAAATTTTTAATCTTGCACCTCATCATACCTCCCTCAAAGAGAGAGTGATTGAGAAGGAAAGTCATTGTATAGATTATAACACTGAATCAGTTAGTGAAATGGAAAATGGAGACAAGTTGGATGCTTTTGATTCTCAATGTCAATCATCCCACCATCAGGGAAGAACCTCCTCCAAATCTCCACGAGGGTTCATGCCATATAAAAGATGTTTAGCTGAGAGAGATGTGAATGCGTTTGTTGATGGATTGGAAAAGAGGAAGGCGCAACGAACTCGAGTGTGCTCATAG 1296 0.4205 MEMQNQKESTKSNNCGMASSCLPDGSTKSETVICKKDVTITTTGDNFTPKARKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKLFQVVRESDGSTESSVKPIDIPPPRPKRKPLHPYPRKSADSFKGHSNESERSPSPNMSAAVKDTQSPTSVLSAFGSEAFGSAFSEQTNRCPSPNSCTTDIHSIHLSPVGKENDCITSISSEEQTGYLASVPSIADLKKDLSLKVELTSEKNENSTEDDTKMPQVTSIKLFGRTVSLTNNQTSVNIDEDRIQSVICKENTCSVESGFDDSLPSWNLHQSLPDFDLGLRNKIFNLAPHHTSLKERVIEKESHCIDYNTESVSEMENGDKLDAFDSQCQSSHHQGRTSSKSPRGFMPYKRCLAERDVNAFVDGLEKRKAQRTRVCS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1675 431 Gene3D - 63 109 - -
Prci1g1675 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Prci1g1675 431 SMART sant 60 108 IPR001005 -
Prci1g1675 431 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Prci1g1675 431 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Prci1g1675 431 MobiDBLite consensus disorder prediction 156 174 - -
Prci1g1675 431 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Prci1g1675 431 CDD SANT 63 106 IPR001005 -
Prci1g1675 431 MobiDBLite consensus disorder prediction 130 155 - -
Prci1g1675 431 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Prci1g1675 431 PANTHER SWI/SNF COMPLEX-RELATED 22 330 - -
Prci1g1675 431 MobiDBLite consensus disorder prediction 117 174 - -
Prci1g1675 431 MobiDBLite consensus disorder prediction 1 28 - -
Prci1g1675 431 SUPERFAMILY Homeodomain-like 55 109 IPR009057 -
Prci1g1675 431 FunFam protein REVEILLE 6 isoform X1 63 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1675 Prci-Chr1 36518175 36521777 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci1g1675 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1675 - - pcin:129319842 848.966