Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1672 ATGGCAGCCACTGTTGCAGCGACTACTCTAGTAACTTCGTTGCCCGTTTCTTTCAGCAACAAGATTCTGAGAAACACAATTTGTGTGGTTAACATTCGAAGCAAGAGAAATTTCCCTTCCTCATCATCACTCAGAAATGGCTTCTCCTTCGTGTTGGCGTGTCTGCCTCATCCTCCTGCTTCTCAATCTCCAATTTCATCTTCCGATACCAAACCCACTTCTTATCTTTCAACTAAGCTCTACGTCAGTGGGCTATCTTTTCGCACAACTGAAGAGAGCTTGCGAAATGCCTTTAAGAAATTTGGTGAACTTGTGGAAGTCAACCTCGTGATGGATAAAATAGCAAATAGACCAAGAGGATTTGCCTTTCTTCGTTATGCAACTGAAGAGGATTCTCAGAAGGCTATTGATGGAATGCATGGGAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTCGCAAAACCAAGATCAGAGTTGCGCCAAAGGCTTAACCAAAAACCTAGATAG 510 0.4314 MAATVAATTLVTSLPVSFSNKILRNTICVVNIRSKRNFPSSSSLRNGFSFVLACLPHPPASQSPISSSDTKPTSYLSTKLYVSGLSFRTTEESLRNAFKKFGELVEVNLVMDKIANRPRGFAFLRYATEEDSQKAIDGMHGKFLDGRVIFVEVAKPRSELRQRLNQKPR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1672 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Prci1g1672 169 SMART rrm2_1 79 152 IPR003954 GO:0003676
Prci1g1672 169 SUPERFAMILY RNA-binding domain, RBD 64 166 IPR035979 GO:0003676
Prci1g1672 169 SMART rrm1_1 79 152 IPR000504 GO:0003723
Prci1g1672 169 Gene3D - 60 169 IPR012677 -
Prci1g1672 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 149 IPR000504 GO:0003723
Prci1g1672 169 PANTHER NUCLEOLAR PROTEIN 8 54 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1672 Prci-Chr1 36514773 36517251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1672 78 166 Eukaryotic Initiation Factors Gene Family AT4G34110 30.108 7.85e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1672 - - egr:104456410 189.889