Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1661 ATGGTGAGAAAGAAGAGAACTGAAGGTCCCAGTGGAGGTGAAAGCTCCGAGAGTCATGAGAGCGGGGGAAGTGGAAGAGGCCATCAACGCCCTCCTGAAAGGAGTCCTCAAGTCCCGCAACAGTCTGCTGGAGGACCCCAAGGAGGTAGAGGCTGGTATCCTCAAGGAGGGCGAGGAGGCTATGGTGGAGGACGTGGTCGTGGGTTACCCCAACAGCAGTACAGTGGCCCCCCTGATTATCAAGGCAGGGGGAGGGGAGGATCTTTTCAACAGGGAGGTCGTGGCGGATTTAGTGGTGGTCGGGGTGGTGCTGGTGTAAGTGGACACGGTGGAGGACCTTCATATGGTGTCCCATCCCGACCAGATGTTCCCGAGCTGCACCAAGCAACCCCAGCTTCATATCAAGCTGGGGTGACGCCTCAGTATGCGATATCTGAGGCCAGTTCTGTTTCACAACCTTCTGAGATGTCACAGTTGGAACAGCAAACTAAGCAGTTAACCATTCATCCAGAAGCTTCTTCTGGCCCACCAGCCTCAAGTAAATCAGTGAGGTTTCCCCTTCGGCCTGGAAAGGGTAGCTCTGGCACAAAGTGTATAGTGAAAGCTAACCACTTCTTTGCTGAGTTACCTAACAAAGATCTTCACCAATATGATGTAACCATTACTCCAGAAGTGCCATCAAGAGGTGTAAACCGTGCCGTTATGGAGCAGCTTGTTAGGCTGTACCGTGAGTCTCATCTTGGCATGAGACTACCTGCATATGATGGTCGCAAGAGCCTGTACACTGCTGGTCCTCTTCCTTTTGTTTCGAATGAGTTTAGAATCACCCTCATTGATGAAGAGGAAGGAGCAGGAGCAGGAGTTCAAAGGAGAGTGAGGGATTTCAAAGTTGTGATCAAATTTGCTGCCCGAGCTGACCTTCACCACTTAGGAATGTTTTTGCAAGGAAGACAAACAGATGCACCCCAGGAAGCCCTTCAGGTTCTTGACATTGTTCTGCGTGAACTACCGACCACTAGGTATTGTCCTGTTGGAAGATCTTTCTATTCACCTGATATAGGTAGGAGGCAACCATTAGGTGAGGGTTTGGAGAGCTGGCGTGGGTTTTACCAAAGCATTCGTCCAACTCAGATGGGATTATCACTTAACATTGATATGTCATCAACAGCATTTATTGAACCATTGCCAGTAATTGATTTTGTAACTCAGCTGCTGAACAGGGATGTCACCACCCGACCATTATCTGATGCTGATCGTGTAAAGATCAAAAAAGCACTTCGTGGTGTCAAAGTTGAAGTAACACACCGGGGAAACATGAGAAGAAAATATCGCATCTCTGGCTTGACATCACAGGCAACTAGAGAGCTGACATTCCCTGTTGATGAGAGGGGGACTGTAAAATCTGTTGTGGAGTACTTTTATGAGACATACGGATTTGTCATTCAACACACACAGTGGCCTTGCTTACAAGTGGGAAATACTAATAGACCGAACTATTTACCAATGGAGGTTTGCAAGATTGTAGAAGGTCAAAGGTACTCAAAGAGGTTGAATGAGAGGCAGATTACTGCTTTGCTTAAAGTCACCTGTCAGCGACCTGTTGAGAGGGAGCGAGATATCATGCAAACGGTTCATCATAATGCTTACCATGAAGATCCTTATGCTAGAGAGTTTGGAATCAAAATCAGTGAGAAACTTGCACAAGTTGAAGCTCGCATTCTTCCTGCACCTTGGCTGAAGTATCACGATACCGGAAGAGAAAAGGACTGCCTTCCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGGGGGACTGTTAACAACTGGATCTGCATAAATTTTTCAAGAAACGTTCAAGACAGTGTGGCTAGTGGCTTTTGTTATGAACTTGCACAGATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCAGTACTGCCTGTGGTCAGTGCCCGCCATGACCATGTTGATAAGGTTCTGAAATCCCGCTATCATGATGCCAAGGCAAAACTGAAGAACAAGGAGCTTGATCTGCTTATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGATCTGAAACGTATTTGTGAAACGGATCTTGGGGTTGTTTCCCAGTGCTGTTTGACAAAACATGTCTTTAAAATGAACAAGCAGTATCTTGCAAATGTTGCTTTAAAAATCAATGTGAAGGTTGGTGGAAGGAACACAGTGCTTGTTGATGCACTTTCAAGACGCATACCATTAGTTAGTGACCGACCCACAATTATATTTGGAGCTGATGTTACTCATCCACACCCTGGGGAGGATTCTAGTCCATCGATAGCAGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACCAAGTATTCTGGTTTGGTCTGTGCTCAAGCACATAGGCAGGAGCTCATCCAAGACCTTTTCAAACAATGGCAAGATCCAGCAAGGGGGACAGTAACCGGTGGAATGATCAAGGAGCTTCTCATATCTTTTCGAAGAGCCACAGGGCAGAAGCCACAACGCATCATATTTTACAGGGATGGTGTGAGTGAAGGGCAGTTTTATCAAGTTTTACTTTTTGAGCTTGATGCTATTCGCAAGGCGTGTGCATCATTAGAACCTAACTATCAGCCTCCTGTCACTTTTGTCGTGGTCCAAAAGCGCCACCACACTAGGCTGTTTGCAAACAACCATCATGATAGGAATTCGGTTGACCGTAGTGGGAATATATTGCCTGGTACGGTTGTAGACTCCAAAATTTGTCATCCAACTGAGTTTGACTTCTACCTTTGTAGCCATGCTGGGATACAGGGTACAAGCCGACCTGCCCATTACCACGTGTTATGGGATGAAAACAATTTTACTGCTGATGCACTTCAGACACTGACTAACAACCTCTGCTACACTTATGCAAGATGCACGCGATCTGTTTCAATCGTCCCTCCTGCATACTATGCACACTTGGCTGCTTTCCGAGCTCGATTTTATATGGAACCTGCCACGTCAGACAGCGAGTCAATGAGTGCTGCTGCTGGACGTGGACCAGGTGTAGGACGTAGCACTCGCTCACCAGGTGCTAGTGCTGCGGTCAGGCCTCTTCCTGCTCTTAAAGAGAATGTGAAGAGGGTCATGTTTTATTGTTAA 3162 0.4639 MVRKKRTEGPSGGESSESHESGGSGRGHQRPPERSPQVPQQSAGGPQGGRGWYPQGGRGGYGGGRGRGLPQQQYSGPPDYQGRGRGGSFQQGGRGGFSGGRGGAGVSGHGGGPSYGVPSRPDVPELHQATPASYQAGVTPQYAISEASSVSQPSEMSQLEQQTKQLTIHPEASSGPPASSKSVRFPLRPGKGSSGTKCIVKANHFFAELPNKDLHQYDVTITPEVPSRGVNRAVMEQLVRLYRESHLGMRLPAYDGRKSLYTAGPLPFVSNEFRITLIDEEEGAGAGVQRRVRDFKVVIKFAARADLHHLGMFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDIGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVTTRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTVKSVVEYFYETYGFVIQHTQWPCLQVGNTNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAREFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVASGFCYELAQMCYISGMAFNPEPVLPVVSARHDHVDKVLKSRYHDAKAKLKNKELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYSGLVCAQAHRQELIQDLFKQWQDPARGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPATSDSESMSAAAGRGPGVGRSTRSPGASAAVRPLPALKENVKRVMFYC 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1661 1053 FunFam Protein argonaute-2 388 514 - -
Prci1g1661 1053 Pfam N-terminal domain of argonaute 197 333 IPR032474 -
Prci1g1661 1053 Gene3D - 573 746 - -
Prci1g1661 1053 Pfam Piwi domain 684 1003 IPR003165 GO:0003676
Prci1g1661 1053 SMART DUF1785_2 342 394 IPR014811 -
Prci1g1661 1053 CDD Piwi_ago-like 553 1003 IPR045246 -
Prci1g1661 1053 Gene3D - 752 1053 IPR036397 GO:0003676
Prci1g1661 1053 FunFam Argonaute 10 573 746 - -
Prci1g1661 1053 MobiDBLite consensus disorder prediction 1 126 - -
Prci1g1661 1053 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 173 1005 - -
Prci1g1661 1053 SMART Piwi_a_2 683 1004 IPR003165 GO:0003676
Prci1g1661 1053 FunFam protein argonaute 10-like 752 1053 - -
Prci1g1661 1053 Pfam Argonaute linker 2 domain 535 581 IPR032472 -
Prci1g1661 1053 CDD PAZ_argonaute_like 394 508 - -
Prci1g1661 1053 Pfam PAZ domain 399 524 IPR003100 GO:0005515
Prci1g1661 1053 ProSiteProfiles Piwi domain profile. 683 1004 IPR003165 GO:0003676
Prci1g1661 1053 Pfam Argonaute linker 1 domain 343 393 IPR014811 -
Prci1g1661 1053 ProSiteProfiles PAZ domain profile. 395 509 IPR003100 GO:0005515
Prci1g1661 1053 MobiDBLite consensus disorder prediction 146 180 - -
Prci1g1661 1053 SMART PAZ_2_a_3 399 531 IPR003100 GO:0005515
Prci1g1661 1053 Pfam Glycine-rich region of argonaut 76 174 IPR024357 -
Prci1g1661 1053 SUPERFAMILY PAZ domain 199 546 IPR036085 GO:0005515
Prci1g1661 1053 MobiDBLite consensus disorder prediction 146 193 - -
Prci1g1661 1053 Gene3D paz domain 388 513 - -
Prci1g1661 1053 SUPERFAMILY Ribonuclease H-like 669 1005 IPR012337 -
Prci1g1661 1053 Pfam Mid domain of argonaute 592 667 IPR032473 -
Prci1g1661 1053 MobiDBLite consensus disorder prediction 1012 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1661 Prci-Chr1 36439382 36446732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1661 79 1053 Eukaryotic Initiation Factors Gene Family AT1G48410 81.199 0.0 1599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1661 K11593 - gmx:100780375 1756.11