Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1639 ATGCAAATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTTGAAAGTTCCGATACCATAGATAATGTGAAGACAAAGATCCAAGACAAAGAAGGAATCCCGCCTGATCAGCAGCGTCTCATATTCGCTGGAAAGCAGCTTGAGGATGGGCGAACTTTAGCTGACTATAATATCCAGAAGGAGTCTACACTCCACCTTGTTCTTCGGCTTCGTGGGGGTATGCAAATTTTTGTAAAAACCCTTACAGGAAAGACCATTACCCTTGAGGTTGAGAGTTCAGACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAACAAAGGCTTATTTTTGCTGGTAAGCAGCTTGAAGATGGCCGAACCCTTGCTGACTATAATATTCAGAAGGAGTCTACGCTTCACCTGGTGTTGAGACTCCGTGGTGGGATGCAAATCTTTGTGAAGACCCTCACTGGTAAAACTATCACTTTGGAAGTTGAGAGCTCAGACACTATTGACAATGTTAAGACTAAGATTCAAGACAAAGAGGGAATCCCGCCTGATCAGCAAAGGTTGATATTTGCCGGAAAACAGTTGGAGGATGGAAGGACATTGGCAGATTACAACATTCAGAAGGAATCTACTCTTCACCTTGTGTTGCGTCTCCGTGGTGGGATGCAGATCTTTGTAAAAACCCTCACAGGTAAAACCATCACCTTGGAAGTCGAGAGCTCCGACACTATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATCCCACCTGATCAGCAAAGATTGATATTTGCTGGGAAACAGTTGGAGGATGGAAGGACACTGGCGGATTACAATATTCAGAAAGAATCCACTCTTCACCTGGTGCTGCGTCTCCGTGGTGGAATGCAAATCTTTGTGAAGACCCTCACCGGTAAAACAATCACTCTGGAAGTTGAGAGTTCAGACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCACCCGATCAGCAGAGGCTGATATTTGCAGGAAAGCAGCTGGAGGACGGCAGGACTCTGGCTGATTATAATATTCAAAAGGAGTCTACCCTTCACCTTGTTCTGCGTCTCCGCGGTGGCTTTTAG 1146 0.4564 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1639 381 CDD Ubl_ubiquitin 305 380 - -
Prci1g1639 381 FunFam Polyubiquitin 3 153 228 - -
Prci1g1639 381 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Prci1g1639 381 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Prci1g1639 381 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Prci1g1639 381 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Prci1g1639 381 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Prci1g1639 381 PRINTS Ubiquitin signature 87 107 IPR019956 -
Prci1g1639 381 PRINTS Ubiquitin signature 129 150 IPR019956 -
Prci1g1639 381 PRINTS Ubiquitin signature 108 128 IPR019956 -
Prci1g1639 381 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Prci1g1639 381 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Prci1g1639 381 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Prci1g1639 381 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci1g1639 381 SMART ubq_7 229 300 IPR000626 GO:0005515
Prci1g1639 381 SMART ubq_7 153 224 IPR000626 GO:0005515
Prci1g1639 381 SMART ubq_7 305 376 IPR000626 GO:0005515
Prci1g1639 381 SMART ubq_7 1 72 IPR000626 GO:0005515
Prci1g1639 381 SMART ubq_7 77 148 IPR000626 GO:0005515
Prci1g1639 381 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Prci1g1639 381 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Prci1g1639 381 Gene3D - 77 152 - -
Prci1g1639 381 Gene3D - 306 381 - -
Prci1g1639 381 Gene3D - 153 228 - -
Prci1g1639 381 Gene3D - 229 305 - -
Prci1g1639 381 Gene3D - 1 76 - -
Prci1g1639 381 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Prci1g1639 381 CDD Ubl_ubiquitin 1 76 - -
Prci1g1639 381 CDD Ubl_ubiquitin 153 228 - -
Prci1g1639 381 PANTHER UBIQUITIN 229 306 - -
Prci1g1639 381 FunFam Polyubiquitin 3 305 380 - -
Prci1g1639 381 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Prci1g1639 381 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Prci1g1639 381 FunFam Polyubiquitin 3 229 304 - -
Prci1g1639 381 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Prci1g1639 381 FunFam Polyubiquitin 3 1 76 - -
Prci1g1639 381 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Prci1g1639 381 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Prci1g1639 381 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Prci1g1639 381 CDD Ubl_ubiquitin 77 152 - -
Prci1g1639 381 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Prci1g1639 381 CDD Ubl_ubiquitin 229 304 - -
Prci1g1639 381 SUPERFAMILY Ubiquitin-like 151 228 IPR029071 -
Prci1g1639 381 FunFam Polyubiquitin 3 77 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1639 Prci-Chr1 36147022 36149226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1639 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 5.34e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1639 K08770 - twl:119991557 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g1639 1 36147022 36149226 Prci1g1639 1 36147022 36149226 ECH