Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1572 ATGGCACAACTAGCACTTTGCTCTTCTATCAATGACAAGTGGGACTACGATGTGTTCCTTAGTTTCCATGGAGAAGATACTCGATTATGTTTCGTTAGCATTCTCCGTGAATCTCTGCGTCAAAGAGGAATTCGTGTCTTTATTGATGACGAGTTCATCAGAACCGGAGAAGAAATCACGCCAGCACTTCTCAAAGCCATACAAGAATCCAGGATAGCCATCATAGTTTTCTCCGAGAACTATGCGAGCTCGACGTTCTGTCTGGAAGAACTTGAAAAGATTCTCGAGTGCTTTAAAGAGGAAGGTCGGTTAATATATCCAGTGTCTTATTATGTGGATCCATCAGAGCTGCGACGTCCAAGAGGAAGCTATGCGAAAGCGTTGGCCGGATTGGAGAAAAGATTTGAAGACAACATTCAAAAAGTACAAAAATGGAGGTTGGCTTTATTCCAAGCGGCTAACTTGAAAGGCTGTCATCTCAAATCCAAGATTGCAAATGAACAAGAATGTATTACAAAGATCATTAGCGAAGTCTCTACTAAGATTAATCATGATCTTGTTGACATTACTCGTCATCCAGTTGGACTCATGTCTCGAGTGAAAGAAGTGATCTCACTTTTAGAGCTTTGGTCTACTGAGAAAACTAAAATGGTAGGGATTTGGGGAGCTGGTGGAATTGGCAAATCAACAATTGCAAGAGCATTATTTAATTCGATAGCTGATAATTTTGAAGGAGTATGCTTCCTTTCTAATGTAAAAAAAGACTCCCAAATGCCAAATGGTTTGGTACATTTTCAAGAGACATTACTCCTTAAATTAGTCATGGAAAAGGATCTTAAACTGGGTGATTTTCATGAAGGAATACCAATAATAAAACATAGGCTTTGCCAAAAGAAAATTCTTTTGATTCTTGATGATGTTGATAGATTGAAACAGTTAGAAGCACTAGTTAGAAATTGCAATTGGTTTGGTCCTGGAAGTAGAGTTGTCATAACAAGGAATAAACAGTTGTTAGTAACTCATAATGTTAACAAAATTTATAATGTCCAAGAATTAAATGATGAGGAATCTCTTCAATTGCTCAGTTGGTATGCCTTTAAAAAGGAGAATATGAAGTTTGACTTCCTAAAGGTTTCCAATCATGCAATACAATATTGTTGCGGCCTTCCATTAGCTATAGAAGTGATTGGTTCTAACTTGCGAGGTAAAGGAGTCAATGAATGGTATTGTGCATTGGATCAATATAAAAGAAGTCAAGAAGGACCAATTTTGGAACCCCTTAGATCAAGCTATGATGCTTTAGGAGAAATTGAGAAAAATATTTTCCTAGACTTGGCATGTTTCTTTAAAGATGAAGATTTAAGAGAAGTCAAGGGTATGTTGCATTGTTTACATGAAACCCAACCAGACTATATTATTGAAGTTTTGATTGATAAAGCCCTCATCAAGATTGAAGGAGATCAAGTGGGAATGCATGGTTTGATAGAAGATATGGGTAAAATGATTGTTAAGCAAGAATCACCTAGTGAGCCTGGTAAACGGAGTAGGTTATGGTACTACCAAGATATTCTTCATGTTTTAAAACGAAACACAGCACTCAACTTACAACCTGGGAAAAGAAACTTTATTTTTCCTGGAGGGAAATTCCCAGAAAATCTTGACAATTATGACCCTAGAACAAATGATGATTGTAGCTCGTGGCAAAGAGTACAAAAATCACAAAATTGTGAAGAACTTGAAGATGACGTGCCTTACCTAGACATAGATACAAGGATGGCCAATCTCTATGAGCGAGCATACCCATCCAGATGGATCTATGATGTGTTTTTGAGTTATGGAGGTGATTATGGATGTTCAAGCTTTGTTAGTCGTCTCTGTAATTCCATGTGTGCCAAAAGAATCCGTATTTTGCCTAATGATGAATTCCTCACCCCTAGTGTGGAAGAATTCAATGCAATGGAAGAATCCAGGATAGCTATCATAATTATCTCCGAAAACTATGGATCCTCGACATCTTGTTTAAATAGCCTTGCAACCATTCTTGAGTGCTTCAGAAAAGAATGTCGATCCGTTTACACAATATTTTATAATGTGGAGCCATCAAAGTTGCAATATCAAACAGGTAATTGTGAAGAATTATTTGCTATGCTTGAGAAGAAATTAAAACACAGCAAACAACAAGTGCAACAATGGAGGTTGGCTTTGTCTGAAGTAGTTTCAAGAGGCAGATACTATTATTTCAATCGCAATCCCAATCTTAGGAATGCAAAAGAGGACAAGTTTATTCAGGGGTTCATTTATGCAATCTCTTCAAGTATTAATGCATTTCCATTTCGCATTCGGGATGATTCAGTGGGACTTGAGTCTCGGGTACAGGAAATAATCTCACTTCTAGATGTTGGATCTAATGAGGAAGTCAAAATGGTAGGAATTTGTGGAATTTTCGGAATAGGTAAATCAGCATTAGCACGTGCTGTGTGTAATTTCATTGCCCATCATTTTGAAGATTTATGGTATTTTTCTCCTATATCAGAGGAGTACCGAACTTTGGGTAATTTTCTGTATCCGCTCTGTCTTACTGAAAAAGCCAGGGGCAACTATTCTAGTTTGGATAATTTCCTTAGGATAATAAGACAACCCTGGTTCCCGCAAAGGAAGAATCTTGTAATTCTGGATGGTGTTGAAGAATTGGATCATTTGTGA 2703 0.374 MAQLALCSSINDKWDYDVFLSFHGEDTRLCFVSILRESLRQRGIRVFIDDEFIRTGEEITPALLKAIQESRIAIIVFSENYASSTFCLEELEKILECFKEEGRLIYPVSYYVDPSELRRPRGSYAKALAGLEKRFEDNIQKVQKWRLALFQAANLKGCHLKSKIANEQECITKIISEVSTKINHDLVDITRHPVGLMSRVKEVISLLELWSTEKTKMVGIWGAGGIGKSTIARALFNSIADNFEGVCFLSNVKKDSQMPNGLVHFQETLLLKLVMEKDLKLGDFHEGIPIIKHRLCQKKILLILDDVDRLKQLEALVRNCNWFGPGSRVVITRNKQLLVTHNVNKIYNVQELNDEESLQLLSWYAFKKENMKFDFLKVSNHAIQYCCGLPLAIEVIGSNLRGKGVNEWYCALDQYKRSQEGPILEPLRSSYDALGEIEKNIFLDLACFFKDEDLREVKGMLHCLHETQPDYIIEVLIDKALIKIEGDQVGMHGLIEDMGKMIVKQESPSEPGKRSRLWYYQDILHVLKRNTALNLQPGKRNFIFPGGKFPENLDNYDPRTNDDCSSWQRVQKSQNCEELEDDVPYLDIDTRMANLYERAYPSRWIYDVFLSYGGDYGCSSFVSRLCNSMCAKRIRILPNDEFLTPSVEEFNAMEESRIAIIIISENYGSSTSCLNSLATILECFRKECRSVYTIFYNVEPSKLQYQTGNCEELFAMLEKKLKHSKQQVQQWRLALSEVVSRGRYYYFNRNPNLRNAKEDKFIQGFIYAISSSINAFPFRIRDDSVGLESRVQEIISLLDVGSNEEVKMVGICGIFGIGKSALARAVCNFIAHHFEDLWYFSPISEEYRTLGNFLYPLCLTEKARGNYSSLDNFLRIIRQPWFPQRKNLVILDGVEELDHL 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1572 900 PRINTS Disease resistance protein signature 217 232 - -
Prci1g1572 900 PRINTS Disease resistance protein signature 386 400 - -
Prci1g1572 900 PRINTS Disease resistance protein signature 294 308 - -
Prci1g1572 900 Pfam TIR domain 606 771 IPR000157 GO:0007165
Prci1g1572 900 Pfam TIR domain 16 184 IPR000157 GO:0007165
Prci1g1572 900 ProSiteProfiles TIR domain profile. 604 739 IPR000157 GO:0007165
Prci1g1572 900 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 534 IPR044974 GO:0006952
Prci1g1572 900 SUPERFAMILY "Winged helix" DNA-binding domain 423 528 IPR036390 -
Prci1g1572 900 SUPERFAMILY Toll/Interleukin receptor TIR domain 597 739 IPR035897 -
Prci1g1572 900 Gene3D - 600 774 IPR035897 -
Prci1g1572 900 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 157 IPR035897 -
Prci1g1572 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 900 IPR027417 -
Prci1g1572 900 Gene3D - 9 180 IPR035897 -
Prci1g1572 900 Gene3D - 775 900 IPR027417 -
Prci1g1572 900 Gene3D - 181 347 IPR027417 -
Prci1g1572 900 Gene3D - 351 435 IPR042197 -
Prci1g1572 900 Pfam NB-ARC domain 207 434 IPR002182 GO:0043531
Prci1g1572 900 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Prci1g1572 900 SMART till_3 15 155 IPR000157 GO:0007165
Prci1g1572 900 SMART till_3 605 741 IPR000157 GO:0007165
Prci1g1572 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Prci1g1572 900 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1572 Prci-Chr1 34970478 34981934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1572 194 528 WRKY Transcription Factor Family AT5G45050 33.724 9.13e-46 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1572 - - pcin:129311761 1121.69