Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1571 ATGGCACAACTAGCACTTTGCTCTTCTATCAATGACAAGTGGGACTACGATGTGTTCCTTAGTTTCCATGGAGAAGATACTCGATTATGTTTCGTTAGCATTCTCCGTGAATCTCTGCGTCAAAGAGGAATTCGTGTCTTTATTGATGACGAGTTCATCAGAACCGGAGAAGAAATCACGCCAGCACTTCTCAAAGCCATACAAGAATCCAGGATAGCCATCATAGTTTTCTCCGAGAACTATGCGAGCTCGACGTTCTGTCTGGAAGAACTTGAAAAGATTCTCGAGTGCTTTAAAGAGGAAGGTCGGTTAATATATCCAGTGTCTTATTATGTGGATCCATCAGAGCTGCGACGTCCAAGAGGAAGCTATGCGAAAGCGTTGGCCGGATTGGAGAAAAGATTTGAAGACAACATTCAAAAAGTACAAAAATGGAGGTTGGCTTTATTCCAAGCGGCTAACTTGAAAGGCTGTCATCTCAAATCCAAGATTGCAAATGAACAAGAATGTATTACAAAGATCATTAGCGAAGTCTCTACTAAGATTAATCATGATCTTGTTGACATTACTCGTCATCCAGTTGGACTCATGTCTCGAGTGAAAGAAGTGATCTCACTTTTAGAGCTTTGGTCTACTGAGAAAACTAAAATGGTAGGGATTTGGGGAGCTGGTGGAATTGGCAAATCAACAATTGCAAGAGCATTATTTAATTCGATAGCTGATAATTTTGAAGGAGTATGCTTCCTTTCTAATGTAAAAAAAGACTCCCAAATGCCAAATGGTTTGGTACATTTTCAAGAGACATTACTCCTTAAATTAGTCATGGAAAAGGATCTTAAACTGGGTGATTTTCATGAAGGAATACCAATAATAAAACATAGGCTTTGCCAAAAGAAAATTCTTTTGATTCTTGATGATGTTGATAGATTGAAACAGTTAGAAGCACTAGTTAGAAATTGCAATTGGTTTGGTCCTGGAAGTAGAGTTGTCATAACAAGGAATAAACAGTTGTTAGTAACTCATAATGTTAACAAAATTTATAATGTCCAAGAATTAAATGATGAGGAATCTCTTCAATTGCTCAGTTGGTATGCCTTTAAAAAGGAGAATATGAAGTTTGACTTCCTAAAGGTTTCCAATCATGCAATACAATATTGTTGCGGCCTTCCATTAGCTATAGAAGTGATTGGTTCTAACTTGCGAGGTAAAGGAGTCAATGAATGGTATTGTGCATTGGATCAATATAAAAGAAGTCAAGAAGGACCAATTTTGGAACCCCTTAGATCAAGCTATGATGCTTTAGGAGAAATTGAGAAAAATATTTTCCTAGACTTGGCATGTTTCTTTAAAGATGAAGATTTAAGAGAAGTCAAGGGTATGTTGCATTGTTTACATGAAACCCAACCAGACTATATTATTGAAGTTTTGATTGATAAAGCCCTCATCAAGATTGAAGGAGATCAAGTGGGAATGCATGGTTTGATAGAAGATATGGGTAAAATGATTGTTAAGCAAGAATCACCTAGTGAGCCTGGTAAACGGAGTAGGTTATGGTACTACCAAGATATTCTTCATGTTTTAAAACGAAACACAGCACTCAACTTACAACCTGGGAAAAGAAACTTTATTTTTCCTGGAGGGAAATTCCCAGAAAATCTTGACAATTATGTGCATATCAATGACACCAAGGTAGATATATCTTACGAGTGGCTTTTGTTATCAACAATGAAGAGGGGTCATTTACATATATGTGATTTGCAAAGCATGATTGGAAAGGCTAAACTCAGCCATGTATATAAATGGAATCACGTAAAGGTTTCCATTAAGAGAAAGACACAAGATATAAAAAGTGAAAGTGAGATTCATTTTGCACTTCATGTCTACAAGCTACAAAGTAACTCAAACACCATCCGATTCACAGACCCTAGAACAAATGATGATTGTAGCTCGTGGCAAAGAGTACAAAAATCACAAAATTGTGAAGAACTTGAAGATGACGTGCCTTACCTAGACATAGATACAAGGATGGCCAATCTCTATGAGCGAGCATACCCATCCAGATGGATCTATGATGTGTTTTTGAGTTATGGAGGTGATTATGGATGTTCAAGCTTTGTTAGTCGTCTCTGTAATTCCATGTGTGCCAAAAGAATCCGTATTTTGCCTAATGATGAATTCCTCACCCCTAGTGTGGAAGAATTCAATGCAATGGAAGAATCCAGGATAGCTATCATAATTATCTCCGAAAACTATGGATCCTCGACATCTTGTTTAAATAGCCTTGCAACCATTCTTGAGTGCTTCAGAAAAGAATGTCGATCCGTTTACACAATATTTTATAATGTGGAGCCATCAAAGTTGCAATATCAAACAGGTAATTGTGAAGAATTATTTGCTATGCTTGAGAAGAAATTAAAACACAGCAAACAACAAGTGCAACAATGGAGGTTGGCTTTGTCTGAAGTAGTTTCAAGAGGCAGATACTATTATTTCAATCGCAATCCCAATCTTAGGAATGCAAAAGAGGACAAGTTTATTCAGGGGTTCATTTATGCAATCTCTTCAAGTATTAATGCATTTCCATTTCGCATTCGGGATGATTCAGTGGGACTTGAGTCTCGGGTACAGGAAATAATCTCACTTCTAGATGTTGGATCTAATGAGGAAGTCAAAATGGTAGGAATTTGTGGAATTTTCGGAATAGGTAAATCAGCATTAGCACGTGCTGTGTGTAATTTCATTGCCCATCATTTTGAAGATTTATGGTATTTTTCTCCTATATCAGAGGAGTACCGAACTTTGGGTAATTTTCTGTATCCGCTCTGTCTTACTGAAAAAGCCAGGGGCAACTATTCTAGTTTGGATAATTTCCTTAGGATAATAAGACAACCCTGGTTCCCGCAAAGGAAGAATCTTGTAATTCTGGATGGTGTTGAAGAATTGGATCATTTGTGA 2955 0.3723 MAQLALCSSINDKWDYDVFLSFHGEDTRLCFVSILRESLRQRGIRVFIDDEFIRTGEEITPALLKAIQESRIAIIVFSENYASSTFCLEELEKILECFKEEGRLIYPVSYYVDPSELRRPRGSYAKALAGLEKRFEDNIQKVQKWRLALFQAANLKGCHLKSKIANEQECITKIISEVSTKINHDLVDITRHPVGLMSRVKEVISLLELWSTEKTKMVGIWGAGGIGKSTIARALFNSIADNFEGVCFLSNVKKDSQMPNGLVHFQETLLLKLVMEKDLKLGDFHEGIPIIKHRLCQKKILLILDDVDRLKQLEALVRNCNWFGPGSRVVITRNKQLLVTHNVNKIYNVQELNDEESLQLLSWYAFKKENMKFDFLKVSNHAIQYCCGLPLAIEVIGSNLRGKGVNEWYCALDQYKRSQEGPILEPLRSSYDALGEIEKNIFLDLACFFKDEDLREVKGMLHCLHETQPDYIIEVLIDKALIKIEGDQVGMHGLIEDMGKMIVKQESPSEPGKRSRLWYYQDILHVLKRNTALNLQPGKRNFIFPGGKFPENLDNYVHINDTKVDISYEWLLLSTMKRGHLHICDLQSMIGKAKLSHVYKWNHVKVSIKRKTQDIKSESEIHFALHVYKLQSNSNTIRFTDPRTNDDCSSWQRVQKSQNCEELEDDVPYLDIDTRMANLYERAYPSRWIYDVFLSYGGDYGCSSFVSRLCNSMCAKRIRILPNDEFLTPSVEEFNAMEESRIAIIIISENYGSSTSCLNSLATILECFRKECRSVYTIFYNVEPSKLQYQTGNCEELFAMLEKKLKHSKQQVQQWRLALSEVVSRGRYYYFNRNPNLRNAKEDKFIQGFIYAISSSINAFPFRIRDDSVGLESRVQEIISLLDVGSNEEVKMVGICGIFGIGKSALARAVCNFIAHHFEDLWYFSPISEEYRTLGNFLYPLCLTEKARGNYSSLDNFLRIIRQPWFPQRKNLVILDGVEELDHL 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1571 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Prci1g1571 984 SUPERFAMILY "Winged helix" DNA-binding domain 423 528 IPR036390 -
Prci1g1571 984 Gene3D - 351 435 IPR042197 -
Prci1g1571 984 SUPERFAMILY Toll/Interleukin receptor TIR domain 681 823 IPR035897 -
Prci1g1571 984 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 623 IPR044974 GO:0006952
Prci1g1571 984 Pfam NB-ARC domain 207 434 IPR002182 GO:0043531
Prci1g1571 984 ProSiteProfiles TIR domain profile. 688 823 IPR000157 GO:0007165
Prci1g1571 984 Gene3D - 9 180 IPR035897 -
Prci1g1571 984 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Prci1g1571 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 859 984 IPR027417 -
Prci1g1571 984 Gene3D - 181 347 IPR027417 -
Prci1g1571 984 Gene3D - 859 984 IPR027417 -
Prci1g1571 984 Pfam TIR domain 690 855 IPR000157 GO:0007165
Prci1g1571 984 Pfam TIR domain 16 184 IPR000157 GO:0007165
Prci1g1571 984 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 157 IPR035897 -
Prci1g1571 984 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Prci1g1571 984 Gene3D - 684 858 IPR035897 -
Prci1g1571 984 SMART till_3 15 155 IPR000157 GO:0007165
Prci1g1571 984 SMART till_3 689 825 IPR000157 GO:0007165
Prci1g1571 984 PRINTS Disease resistance protein signature 294 308 - -
Prci1g1571 984 PRINTS Disease resistance protein signature 217 232 - -
Prci1g1571 984 PRINTS Disease resistance protein signature 386 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1571 Prci-Chr1 34970478 34981934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1571 194 528 WRKY Transcription Factor Family AT5G45050 33.724 1.24e-45 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1571 - - pcin:129311761 1988