Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1564 ATGGATCAGAAAACACTGGAAGAAGGTGGACAAAACGCTTTGAATTTTAAGTGTGTGAAGATCCTTCATGGAGCTGATAAATCTATTGCTTGTCAGACTCCAAAGAAGACTGGTGAGCCCTTACCTACCAAATCCAAGGAGGGATCCACCAAGCTTCCAGAAACACACAAGGCTCTAGCAGAGTTATTTGACCATATGAGTTGTTCATTGAGGTTGCTTCGACTGTGTAAAAAATCTGCTACCTTCCAAAATATTTGTTCCCAAGTTGAAGTTCTTGCTGCAAGAAAAGTCTCGTACACGGATCTTGCGCAGATAAAGTATATACTTCCTGAAGCCATACACATAGAGAAGGTGTTAGTACACGACAACAGAAGCTCGTGTATGAAGCCTGATTTGAAGATTACCTTGGTTTATGAGGCTGTGCTTGGACACTCGAGTGAAAATACTTACATGGCTCTCCGGCAACTTTTTAGTGCAAAGCTACTTGAGTTCTTCAATACTCATCCAGAGAATACTGATATTCCCGAGGCTAAACTACCAGAACCTTTCCAACAAAGAACTCATAGCTTGATTTGTGAGGATTTTCCTGTAGATCCTTCAACAGTACTCTCATCACCAACTTCTGATCAAAATCAACAGCTACAAGAATGTCAGCCATATCCTTTTAAAAGGCATTTCTCAAAGAATAATGTTGTGGCAGAGACAGAAAATAATGTAGCAAGTCAAATTTCTCAGTTACATCATTTATCTGATTGCGTGGATAATGAAGGAGGTGAAGGGGACCGTAAAGGGCAGAACAAGTGTACTACTTCATGTTTGAAATCTGAGAGCACTAATAATCAGGATATGGAAAAAGGACAGCAGAATGAATCATGTTCTATGGGATTCCTATGTAGTGTTTTTAATACACCAGCACGTCTGATTTGCTCTCCACAGTCTATTACCCATGGTAGTTCCGAAAGCTCTTATCTCAAGATTGCCTCATCCACAGATATCGTAGTCACAGAGACGCCTGCTCAGTCAACACCTAGAAGATTGGTGCCCAATTCTGATGTTAAACTCAAGATTATGATCACCCAGAATTCAATTTCATGCACTAAGCAAGTAAAAAGAGTTCTCTTTTCTCAAGAAGGTGACTATGATGCTGACAAATTAGAATCAAGTAGAGATGCTTTCGACAACATTCCTGAAGTTAGTCAAGGATGCACCGAGGATTTTAATATTTCATGCACCAAGCAAGTAAAAAGAGTTCTTTTTTTGCAAGAAGGTGATTATGTTGCTGACAAATTAGAATCAAGCAGAGATGCTTTCGACAACATTCCTGAAGCTAGTCAAGGATGCACCGAGGATTTTAATATTTCTAATTCTGTTGTTCTATCCCAGAAGGTGGCACCTCGCCTTGATATTTCCCATGAAAATACGAATCAGACTCAAGGTGGTTCAACAACGTGGCAGCAGATTCCTTCACCGTTGCTTGGCCTTTTTGATGTGATATATTCTATATTTTGTGCTGTCAAATTCTCTCCAATCACGAAAGAGGAGCTCCTGCACAAGATAATAATGAATAGTTTAGATTTTGTTGAGATGAGAGAAGCTGAAGAACAGATTAATTTTCTTGAAAAGGTAGTGCCAGATTGGATCTATAGGAAGTTGGGCCCTAGTGGAGGTATTATGTACTGTATTAAGGAGGTATCAGATTTGGAGTCTGTTCGTTCAAGGCTATCTAGCAATAGTATCAAGGCCTAG 1746 0.3975 MDQKTLEEGGQNALNFKCVKILHGADKSIACQTPKKTGEPLPTKSKEGSTKLPETHKALAELFDHMSCSLRLLRLCKKSATFQNICSQVEVLAARKVSYTDLAQIKYILPEAIHIEKVLVHDNRSSCMKPDLKITLVYEAVLGHSSENTYMALRQLFSAKLLEFFNTHPENTDIPEAKLPEPFQQRTHSLICEDFPVDPSTVLSSPTSDQNQQLQECQPYPFKRHFSKNNVVAETENNVASQISQLHHLSDCVDNEGGEGDRKGQNKCTTSCLKSESTNNQDMEKGQQNESCSMGFLCSVFNTPARLICSPQSITHGSSESSYLKIASSTDIVVTETPAQSTPRRLVPNSDVKLKIMITQNSISCTKQVKRVLFSQEGDYDADKLESSRDAFDNIPEVSQGCTEDFNISCTKQVKRVLFLQEGDYVADKLESSRDAFDNIPEASQGCTEDFNISNSVVLSQKVAPRLDISHENTNQTQGGSTTWQQIPSPLLGLFDVIYSIFCAVKFSPITKEELLHKIIMNSLDFVEMREAEEQINFLEKVVPDWIYRKLGPSGGIMYCIKEVSDLESVRSRLSSNSIKA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1564 581 SUPERFAMILY "Winged helix" DNA-binding domain 49 183 IPR036390 -
Prci1g1564 581 Gene3D - 483 579 IPR038090 -
Prci1g1564 581 PANTHER DNA REPLICATION FACTOR CDT1 37 575 IPR045173 GO:0003677|GO:0030174|GO:0071163
Prci1g1564 581 SMART CDT1_2 52 181 IPR014939 -
Prci1g1564 581 CDD Cdt1_m 44 212 IPR014939 -
Prci1g1564 581 Pfam DNA replication factor CDT1 like 52 138 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1564 Prci-Chr1 34894529 34899682 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1564 494 574 Core DNA Replication Machinery Family AT3G54710 40.741 1.30e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1564 K10727 - gmx:102670055 445.277