Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1554 ATGGCAACACGTAGATATGCGTTCGGAAGGGTAGATGAGGCAACACATCCAGACTCCATGAGAGCCACCGTAGCTGAGTTTGTGTCCACTTGTATCTTTGTGTTCGTCGGAGAAGGCTCCATCCTCGCAATGGACAAGATATACAGGGATCCAGGATCGTCAGCCGGCGAGCTCATGGCGATTGCGACAGCGCATGCGTTTGCATTATTTGCGGCTGTATCGGCGAGCATGCATGTGTCGGGGGGTCACGTGAACCCCGCTGTGACGTTCGGCGCTCTTCTCGGCGGAAGGATATCGGTGCTGCGAGCTATATACTACTGGGTGGCTCAACTCCTCGGCGCCATTGTTGCTGCTCTCTTGCTCAGGCTGGTCACCAATAACATGAGACCACCGTCGTTCACGTTGGGAATAGGGGAGGGCGCGATGCACGCACTTATATTCGAGATAGTGATGACGTTCGGTCTGATGTACACCGTTTACGGCACCGCCATCGACCCGAAGAGAGGAACCAACGGAGCATTAGCCCCGCTGGCAATTGGGCTCATAGTTGGGGCCAATATTCTCGTTGGTGGGCCTTTTGATGGGGCATGCATGAACCCAGCTAGGGCTTTTGGGCCTTCCTTGGTGGGCTGGAGATGGCACTACCACTGGATCTACTGGGTGGGCCCACTCATCGGAGCTGGGCTCGCAGCCCTCATCTATGAATACACCGTCATCCCCACTGAGCCACCTCATCCTCACCAACCCTTGGCTCCTGAGGATTACTGA 768 0.5573 MATRRYAFGRVDEATHPDSMRATVAEFVSTCIFVFVGEGSILAMDKIYRDPGSSAGELMAIATAHAFALFAAVSASMHVSGGHVNPAVTFGALLGGRISVLRAIYYWVAQLLGAIVAALLLRLVTNNMRPPSFTLGIGEGAMHALIFEIVMTFGLMYTVYGTAIDPKRGTNGALAPLAIGLIVGANILVGGPFDGACMNPARAFGPSLVGWRWHYHWIYWVGPLIGAGLAALIYEYTVIPTEPPHPHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1554 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Prci1g1554 255 Gene3D Glycerol uptake facilitator protein. 4 243 IPR023271 -
Prci1g1554 255 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Prci1g1554 255 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 FunFam Probable aquaporin TIP1-1 4 251 - -
Prci1g1554 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci1g1554 255 PANTHER AQUAPORIN-8 6 242 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1554 Prci-Chr1 34821917 34823413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1554 2 255 Major Intrinsic Protein MIP AT1G73190 70.076 2.54e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1554 K09873 - gmx:100817450 427.943