Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1540 ATGTCTGAACACAGATATATTCTGGCATTTGTAGTATTAGCTGGTTGCAATATAGGCTTGGCAGCGGCAGCTGGATCTCTTTGTGCTTTTATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCTGAGGTGAAAGCCTATCTCAATGGTATTGATGCTCACTCTATACTGGCCCCAAGCACTCTTTTTGTGAAGGTTTTGGGTGCCATCCTTGGAGTTTCTGCTGGATTTGTCGTGGGCAAAGAGGGGCCTATGGTACACACGGGTGCATGCATTGCTTCCTTGTTAGGGCAGGGTGGATCTCGCAAGTATCGCTTGACTTGGAATTGGCTAAGGCATTTCAAAAATGATCGGGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGTGTTGCAGCTGCATTTCGTGCTCCAGTAGGCGGTGTTCTCTTTGCTCTTGAAGAGGCAGCTACATGGTGGCGGAGTGCTCTCCTTTGGAGGACATTTTTCACTACAGCAGTAGTTGCTATTGTTTTGAGAGCTGGAATTGAGTACTGTGCCACCGGAAAATGTGGGCTATTTGGTGAAGGTGGTTTGATAATGTACGATGTCAGTGCAGCCAAAGTAACATACAGTGGTGCTGATATATTAGCGGTGTTACTCCTAGGAATCCTCGGAGGCATTCTTGGAAGCATATATAATTACTTTGTGGATAAGGTTGTTCGTGCATATAGCATCCTGAATGAAAAAGGTCCAGGTTTCAAAATTTTCATTGTGGTCACAATTTCACTTTTGACATCATGTTGTGCTTATGGCCTACCATGGTTGGCAAAATGCATCCCCTGTCCCGATGATCCGATGGTGAGCTGTCCCACTATTGATGAGTCTGGCAACTACAAGAGTTTTCAATGTCCATCAGGATATTACAATGATCTCGCTTCTCTTTTTCTAAACACCAATGATGATGCTATTCGGAACCTATTCAGCACCAGGACATTCAAAGAATTCCACATCTCCAGCCTGTTTATCTTCTTTGTAACTATTTACTTTCTTGGGGTAGTCACTTATGGTATTGCTATTCCATCAGGGCTTTTCATTCCTGTGATATTGGCGGGTGCAGCATATGGCCGGCTTGTAGGGAGACTATTTGAGACGATCTCCAAACTTGATACTGGATTATACGCCCTCCTCGGAGCTGCCTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCCCTTTGTGTTATATTGCTAGAACTCACCAATGATCTCTTGTTACTCCCTCTTGTGATGTTGGTCTTGCTGGTCTCAAAAACCGTGGCTGATAGCTTTAACAAGGGTGTCTACGATCAAATACTGAAGATAAAGGGACTTCCATATATGGAGGCCCATGCAGAACCTTATATGAGGAATTTAGTTGCACGTGATGTTGTCTCTGGCCCGCTAGTTACCTTCTCTGGGATTGAAATGGTAAGGAATATACTAGATGCTCTGAAAACCACAGGGCATAATGGGTTTCCGGTCATCGATGAACCACCAATCTCAGATGCACCGGAATTGTGTGGGCTTGTTCTTAGGTCTCATCTGCTAGTGCTATTGAAGGGGAAGAACTTCTCAAAAGACAGGGTGCTTACAAGTCGAAACTTCTTACAAAGAATTTCTGCATTAGATTTTGCAAAGGCAGGATCAGGGAAAGGAATCAAACTAGAGGATCTGGAAATTGAAGAGGAAGAGATGGATATGTATGTTGATCTCCACCCCATTACCAATGCATCCCCATACACGGTGGTCGAGACCATGTCACTCGCTAAAGCTGCTATTCTTTTCCGCCAACTTGGTCTTAGGCACATGTGTGTGGTCCCAAAGAGTCAAGGGAGACCTCCAGTTGTTGGGATTCTGACACGCCATGACTTCATGGAGGAGCATGTCCATGGACTTCACCCTAACATGAAACCTCACAGGAGGACTGAGTGA 1953 0.4537 MSEHRYILAFVVLAGCNIGLAAAAGSLCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKVLGAILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWNWLRHFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAATWWRSALLWRTFFTTAVVAIVLRAGIEYCATGKCGLFGEGGLIMYDVSAAKVTYSGADILAVLLLGILGGILGSIYNYFVDKVVRAYSILNEKGPGFKIFIVVTISLLTSCCAYGLPWLAKCIPCPDDPMVSCPTIDESGNYKSFQCPSGYYNDLASLFLNTNDDAIRNLFSTRTFKEFHISSLFIFFVTIYFLGVVTYGIAIPSGLFIPVILAGAAYGRLVGRLFETISKLDTGLYALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQILKIKGLPYMEAHAEPYMRNLVARDVVSGPLVTFSGIEMVRNILDALKTTGHNGFPVIDEPPISDAPELCGLVLRSHLLVLLKGKNFSKDRVLTSRNFLQRISALDFAKAGSGKGIKLEDLEIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMEEHVHGLHPNMKPHRRTE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1540 650 Pfam CBS domain 585 633 IPR000644 -
Prci1g1540 650 Gene3D - 455 642 IPR046342 -
Prci1g1540 650 SUPERFAMILY Clc chloride channel 6 456 IPR014743 -
Prci1g1540 650 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Prci1g1540 650 ProSiteProfiles CBS domain profile. 581 642 IPR000644 -
Prci1g1540 650 SMART cbs_1 474 527 IPR000644 -
Prci1g1540 650 SMART cbs_1 585 636 IPR000644 -
Prci1g1540 650 Pfam Voltage gated chloride channel 21 435 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 353 373 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 128 147 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 403 422 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 33 50 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 64 83 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 441 455 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Chloride channel signature 385 401 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1540 650 PRINTS Plant CLC chloride channel signature 305 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1540 650 PRINTS Plant CLC chloride channel signature 149 157 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1540 650 PRINTS Plant CLC chloride channel signature 181 188 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1540 650 PRINTS Plant CLC chloride channel signature 163 173 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1540 650 CDD CBS_pair_voltage-gated_CLC_euk_bac 467 634 - -
Prci1g1540 650 Gene3D Clc chloride channel 1 454 - -
Prci1g1540 650 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 7 637 - -
Prci1g1540 650 SUPERFAMILY CBS-domain pair 458 634 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1540 Prci-Chr1 34609186 34615294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1540 1 645 Ion Channels AT5G49890 73.839 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1540 K05016 - jre:108982434 1038.87