Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1539 ATGGAGAACGAAAATTATGTGAATCTTGATGATGATGCGAATGACATAGAAAACGAAGGTCCATTGGATGGGAAGGACAATGGGAGATACTGGTCAGAGTTTTCTGAAAGAAACATGACATATGCAGAGCCACTTCTGGTGAGGAGAACTAACACCACCTCTCAGATTGCAATAGTTGGTGCTAACCTTAGCCCGATCGAAAGCCTTGACTACGAGATTTTTGAGAATGAAATATTTAAGCAGGACTGGAGATCAAGGAACAAGATTCAGATATTCCAGTATGTGATACTTAAGTGGGGATTTGCTGCTCTTATTGGATTAGGCACTGGGATTGTTGGTTTTCTCAATAATATTGCAGTTGAGAATATAGCTGGTTTCAAGCTGCTCCTAGTAACCAATCTAATGTCTGAACACAGATATATTCTGGCATTTGTAGTATTAGCTGGTTGCAATATAGGCTTGGCAGCGGCAGCTGGATCTCTTTGTGCTTTTATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCTGAGGTGAAAGCCTATCTCAATGGTATTGATGCTCACTCTATACTGGCCCCAAGCACTCTTTTTGTGAAGGTTTTGGGTGCCATCCTTGGAGTTTCTGCTGGATTTGTCGTGGGCAAAGAGGGGCCTATGGTACACACGGGTGCATGCATTGCTTCCTTGTTAGGGCAGGGTGGATCTCGCAAGTATCGCTTGACTTGGAATTGGCTAAGGCATTTCAAAAATGATCGGGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCTGGTGTTGCAGCTGCATTTCGTGCTCCAGTAGGCGGTGTTCTCTTTGCTCTTGAAGAGGCAGCTACATGGTGGCGGAGTGCTCTCCTTTGGAGGACATTTTTCACTACAGCAGTAGTTGCTATTGTTTTGAGAGCTGGAATTGAGTACTGTGCCACCGGAAAATGTGGGCTATTTGGTGAAGGTGGTTTGATAATGTACGATGTCAGTGCAGCCAAAGTAACATACAGTGGTGCTGATATATTAGCGGTGTTACTCCTAGGAATCCTCGGAGGCATTCTTGGAAGCATATATAATTACTTTGTGGATAAGGTTGTTCGTGCATATAGCATCCTGAATGAAAAAGGTCCAGGTTTCAAAATTTTCATTGTGGTCACAATTTCACTTTTGACATCATGTTGTGCTTATGGCCTACCATGGTTGGCAAAATGCATCCCCTGTCCCGATGATCCGATGGTGAGCTGTCCCACTATTGATGAGTCTGGCAACTACAAGAGTTTTCAATGTCCATCAGGATATTACAATGATCTCGCTTCTCTTTTTCTAAACACCAATGATGATGCTATTCGGAACCTATTCAGCACCAGGACATTCAAAGAATTCCACATCTCCAGCCTGTTTATCTTCTTTGTAACTATTTACTTTCTTGGGGTAGTCACTTATGGTATTGCTATTCCATCAGGGCTTTTCATTCCTGTGATATTGGCGGGTGCAGCATATGGCCGGCTTGTAGGGAGACTATTTGAGACGATCTCCAAACTTGATACTGGATTATACGCCCTCCTCGGAGCTGCCTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCCCTTTGTGTTATATTGCTAGAACTCACCAATGATCTCTTGTTACTCCCTCTTGTGATGTTGGTCTTGCTGGTCTCAAAAACCGTGGCTGATAGCTTTAACAAGGGTGTCTACGATCAAATACTGAAGATAAAGGGACTTCCATATATGGAGGCCCATGCAGAACCTTATATGAGGAATTTAGTTGCACGTGATGTTGTCTCTGGCCCGCTAGTTACCTTCTCTGGGATTGAAATGGTAAGGAATATACTAGATGCTCTGAAAACCACAGGGCATAATGGGTTTCCGGTCATCGATGAACCACCAATCTCAGATGCACCGGAATTGTGTGGGCTTGTTCTTAGGTCTCATCTGCTAGTGCTATTGAAGGGGAAGAACTTCTCAAAAGACAGGGTGCTTACAAGTCGAAACTTCTTACAAAGAATTTCTGCATTAGATTTTGCAAAGGCAGGATCAGGGAAAGGAATCAAACTAGAGGATCTGGAAATTGAAGAGGAAGAGATGGATATGTATGTTGATCTCCACCCCATTACCAATGCATCCCCATACACGGTGGTCGAGACCATGTCACTCGCTAAAGCTGCTATTCTTTTCCGCCAACTTGGTCTTAGGCACATGTGTGTGGTCCCAAAGAGTCAAGGGAGACCTCCAGTTGTTGGGATTCTGACACGCCATGACTTCATGGAGGAGCATGTCCATGGACTTCACCCTAACATGAAACCTCACAGGAGGACTGAGTGA 2355 0.445 MENENYVNLDDDANDIENEGPLDGKDNGRYWSEFSERNMTYAEPLLVRRTNTTSQIAIVGANLSPIESLDYEIFENEIFKQDWRSRNKIQIFQYVILKWGFAALIGLGTGIVGFLNNIAVENIAGFKLLLVTNLMSEHRYILAFVVLAGCNIGLAAAAGSLCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKVLGAILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWNWLRHFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAATWWRSALLWRTFFTTAVVAIVLRAGIEYCATGKCGLFGEGGLIMYDVSAAKVTYSGADILAVLLLGILGGILGSIYNYFVDKVVRAYSILNEKGPGFKIFIVVTISLLTSCCAYGLPWLAKCIPCPDDPMVSCPTIDESGNYKSFQCPSGYYNDLASLFLNTNDDAIRNLFSTRTFKEFHISSLFIFFVTIYFLGVVTYGIAIPSGLFIPVILAGAAYGRLVGRLFETISKLDTGLYALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQILKIKGLPYMEAHAEPYMRNLVARDVVSGPLVTFSGIEMVRNILDALKTTGHNGFPVIDEPPISDAPELCGLVLRSHLLVLLKGKNFSKDRVLTSRNFLQRISALDFAKAGSGKGIKLEDLEIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMEEHVHGLHPNMKPHRRTE 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1539 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 768 - -
Prci1g1539 784 Gene3D Clc chloride channel 90 588 - -
Prci1g1539 784 MobiDBLite consensus disorder prediction 1 17 - -
Prci1g1539 784 SUPERFAMILY CBS-domain pair 592 768 IPR046342 -
Prci1g1539 784 PRINTS Chloride channel signature 537 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Chloride channel signature 487 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Chloride channel signature 519 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Chloride channel signature 262 281 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Chloride channel signature 167 184 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Chloride channel signature 575 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 PRINTS Plant CLC chloride channel signature 72 80 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1539 784 PRINTS Plant CLC chloride channel signature 439 455 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1539 784 PRINTS Plant CLC chloride channel signature 283 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1539 784 PRINTS Plant CLC chloride channel signature 297 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1539 784 PRINTS Plant CLC chloride channel signature 315 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci1g1539 784 MobiDBLite consensus disorder prediction 1 27 - -
Prci1g1539 784 Gene3D - 589 776 IPR046342 -
Prci1g1539 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 771 - -
Prci1g1539 784 ProSiteProfiles CBS domain profile. 715 776 IPR000644 -
Prci1g1539 784 SUPERFAMILY Clc chloride channel 76 590 IPR014743 -
Prci1g1539 784 SMART cbs_1 608 661 IPR000644 -
Prci1g1539 784 SMART cbs_1 719 770 IPR000644 -
Prci1g1539 784 FunFam Chloride channel ClC3 90 406 - -
Prci1g1539 784 Pfam Voltage gated chloride channel 155 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci1g1539 784 Pfam CBS domain 719 767 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1539 Prci-Chr1 34609186 34616409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1539 10 779 Ion Channels AT5G49890 71.762 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1539 K05016 - jre:108982434 1239.56