Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1530 ATGGCATCCCGGGGTTTTGAAGTCAGTGATGGCCTGGAGTTCGTAGACGATCCAGAAAATGGAATTGCGGTGAGAGCTTTGCGCCTATTGAAGGAAGGCGACGTTGTTGCCAGAATACCAAAGGATGCTTGCCTGACGGTTAAGACTAGTGGGGCGCGTCAAATGATTGAAGACGCTGATTTGGCTGGTAATCTGGGAGTAGCAGTGGCTCTGATGTATGAGAGAAGCTTGGGCGAGGAGTCACCCTGGACCGGCTACCTTCAGCTTTTGCCTCACCAAGAGTGCCTGCCATTAGTGTGGACTCTGAACGAAGTAAACGAGCTTTTGAGTGGAACTGAGCTACATAAGACAGTGCAAGAGGACAAAGCTCTTATGTATGAGGACTGGAAAGAGAATATTCTGCCGGTATTGGATTTTGCACCTTCAAAGCTTAACCCAAAATTTTTTGGTGTAGAAGAATATTTTGCTGCAAGAAGTCTTGTTGCTTCGCGATCTTTTGAGATAGATGATTACCATGGATTCGGCATGGTTCCCTTGGCAGACCTATTCAATCATAAAACAGATGCCGAGGATGTGCATTTCACTGCTGTATCGTCAAACTATGAATCTGACAATGATGTTGATGGAAATGAGTGTGTCACTGATGAAGAATTGGCTGAAAATTCTTCTATAGATGAGACTGAGTTGGGTACAGCTCTTATTGGGAAATGCAGTGGTAGCAACTTGGAGTCATCTTCAGTTGTGGGAGATGATCCTTCAATGTTGGAGATGATTATGATAAAAAATGTCAGCATTGGAGCTGAGGTATTCAACACTTATGGGTCAATGGGCAATGCTGCTTTACTTCATAGATATGGATTTACTGAGCAAGATAACTGCTATGATATTGTGAACATTGATTTGGAACTGGTGCTTCAGTGGTGTTCTTCTTTGTTTTCAGCTCGATATGCTCGAGCAAGAGTCTCTCTCTGGAGAAGGCTGGGCTATTCGGCATGTGTCAGCCAAAACTCAGAATATTTTGAGATATCATCTAATGGAGAACCACAGACTGAACTCCTGATGTTATTGTACATTATTTTATTATCAGAAGATGCACACCATAAGTTAGACATATCAGTGTCGATTGCAGGAAATATTCATGAATCAAGTGAAACTTCTCTTTCAGGAGACTGCAATATCTTGACAAAGAAAACATATGATATGAGTAGGAAATCCTTGCTGACTAGGAAAGTTTGTGGTGCTTTGTTGTCTGTTGCTGATATGCGTGAAAGTCTTTATGGTCTGAACTCAATAGAAGATGATATTGAGACATTAGGGAGGTGTGATTGTGTTAGAGAAAGAAAGTTGTTCCATTCTTTGGTGCTGCGCGTTGGTGAAAGGAAGATCCTTGAAAAGCTCAGAAATTTTGCCGCCCAGCCATTTAGAACTGGTAAACGAAATTCTGCAAGGAAGAAAATGAAAAGCAGAAGAAAGTAA 1476 0.4201 MASRGFEVSDGLEFVDDPENGIAVRALRLLKEGDVVARIPKDACLTVKTSGARQMIEDADLAGNLGVAVALMYERSLGEESPWTGYLQLLPHQECLPLVWTLNEVNELLSGTELHKTVQEDKALMYEDWKENILPVLDFAPSKLNPKFFGVEEYFAARSLVASRSFEIDDYHGFGMVPLADLFNHKTDAEDVHFTAVSSNYESDNDVDGNECVTDEELAENSSIDETELGTALIGKCSGSNLESSSVVGDDPSMLEMIMIKNVSIGAEVFNTYGSMGNAALLHRYGFTEQDNCYDIVNIDLELVLQWCSSLFSARYARARVSLWRRLGYSACVSQNSEYFEISSNGEPQTELLMLLYIILLSEDAHHKLDISVSIAGNIHESSETSLSGDCNILTKKTYDMSRKSLLTRKVCGALLSVADMRESLYGLNSIEDDIETLGRCDCVRERKLFHSLVLRVGERKILEKLRNFAAQPFRTGKRNSARKKMKSRRK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1530 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 399 - -
Prci1g1530 491 Gene3D set domain protein methyltransferase, domain 1 1 287 - -
Prci1g1530 491 CDD SET_LSMT 11 288 - -
Prci1g1530 491 SUPERFAMILY SET domain 2 292 IPR046341 -
Prci1g1530 491 Pfam SET domain 21 274 IPR001214 GO:0005515
Prci1g1530 491 PIRSF RMS1_SET 1 473 IPR011383 GO:0016279|GO:0018026
Prci1g1530 491 ProSiteProfiles SET domain profile. 10 274 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1530 Prci-Chr1 34552503 34559947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1530 1 486 NAC Transcription Factor Family AT3G56570 55.426 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci1g1530 SET 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1530 - K05302 vra:106769924 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g1530 1 34552503 34559947 Prci1g1530 1 34552503 34559947 ECH