Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1526 ATGGAGTCCAGAATTGTTCATACTACCGATCATCACAAGAGGCCAAGCGTCGTGGAGGAGCTTGGTCCAGAGGAGAAGAAGAAGAAGAAGACGATAATAAAGTACAAAGAGTGCCTAAAGAACCATGCAGCTTCGATGGGAGGGCATGCAACAGATGGGTGTGGCGAGTTCATGGCTGAAGGAGAAGAAGGCACGCCTGACTCTCTCAAGTGCTCAGCTTGCAAGTGTCACAGAAACTTCCACAGAAAACACTTTGAAGCTGAAGATTCTGATGATAATAGCCCTTCTTCTCTACATTATGATTATCATCCTCATCCTCATCATCTTCTTCTTTATTCACAGAAGCTTCCAGATCATGATGGTGCAGATGATCATCAGGTCATGAAACCCTTGTTGATCAATGATTTGTGTCTGGGAAGTTACAATAATAAAAGCGGCTCAAATGCTTCTTCAGATCGTGAGTCTGATGAGAAGAGGGTGATGACGAGGAAGAGGTTCAGGACCAAGTTCAGTGAAGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAGGTTGGGTGGAGGATGCAGAAGGGGGATGAATCCATGGTTCAGCAGTTCTGTGAAGAACTTGGAATCAAGAGAAGAGTGCTCAAAGTGTGGATGCACAATAACAAGAACACTTTCTCCAAGAGAAACCTCATAATCTCCTCCACCTAA 699 0.4464 MESRIVHTTDHHKRPSVVEELGPEEKKKKKTIIKYKECLKNHAASMGGHATDGCGEFMAEGEEGTPDSLKCSACKCHRNFHRKHFEAEDSDDNSPSSLHYDYHPHPHHLLLYSQKLPDHDGADDHQVMKPLLINDLCLGSYNNKSGSNASSDRESDEKRVMTRKRFRTKFSEEQKEKMLRFAEKVGWRMQKGDESMVQQFCEELGIKRRVLKVWMHNNKNTFSKRNLIISST 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1526 232 Pfam ZF-HD protein dimerisation region 33 84 IPR006456 -
Prci1g1526 232 Gene3D - 146 224 - -
Prci1g1526 232 NCBIfam homeobox domain, ZF-HD class 163 220 IPR006455 -
Prci1g1526 232 SUPERFAMILY Homeodomain-like 151 224 IPR009057 -
Prci1g1526 232 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Prci1g1526 232 FunFam Zinc-finger homeodomain protein 2 150 224 - -
Prci1g1526 232 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 34 84 IPR006456 -
Prci1g1526 232 MobiDBLite consensus disorder prediction 1 25 - -
Prci1g1526 232 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1526 Prci-Chr1 34494691 34495866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1526 29 228 ZF-HD Transcription Factor Family AT1G14440 51.923 6.40e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci1g1526 ZF-HD_dimer 9.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1526 - - pcin:129302889 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g1526 1 34494691 34495866 Prci1g1526 1 34494691 34495866 ECH