Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g1520 ATGTGCTGTGGAGACATCTTGCACTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGACAACCACGGATGATGTTGAAGACTGGGTCTATCACCAATTAGAAAGCACAACTCATCTTTTGCATGGGGTAGTCCATGCTAACGGTCATGGGCACCTACTTCGAGTTAATGGTAGAGAAGGTGGTTCCAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCAAAGAAGTTTGGGGTGGAGTACCGTCTACTCAATGCTATTACGAAAGGACATCCTTGGTATGGTGATTGGGGTTATCAGTTTGGTTCTGGTAGCTACGGTCTTACCCATGAATCATATAAGTCTGCTGTTGAATTCCTGTCCAATCTGCCCTTGTCCACCTTTCTTGCCCAAGGGCAGAAATGTGACTCACGTGTACAAGGCATGATCTCATATTACCAGTCTTTGTCAAAGAAAGAGCTTGTAAATATAAGGGGCTTCTTGTGTTTTTTAATGGATTTGATTCATGATGCTCGTAAGACTGCTGCATCAAATATTGATGACATCACCTGCAAGAAGCGACGCCTGAATGTTACTGGAGTGTCTTCTTCATGGACTAAGAGTGACATTGAATGTGTGGAGGAAGCCATGTTGAGAGTGCTTCGAGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGAGCTCTAAGGGGTGCTGTCTGCAAGGTGGCCTCCCCGGAGCTGCTTGATTACTGTCTTGGAGAATTGGGAGGAAAAGTGGTCCTTGGTGCAACAGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGACTAGAGGCGGGGGACAATTCTCGCTATGGATTTGCAACCAATATTTCTTCGGGCTTAAAGAATCCATCTGAAGTGACTCTTCTACACGACCTGAGATACTTTTATAATTCCATTCTTAATCCTCAGACGATGTTGAACTATGATCCAGAGGAGACAAGGGTAATTGCCATGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTCAAGGACTATAAACCCGAGATGATGCCGCTGTCAAACCTGTCTAAGATACGCCTCTCATGTCAATTAGAGCTAGAAGATGAATCTGATGATTTTGCTGCTCACCTCCCACCAGAGTTAGTGATCCTCCCTGGAAATGCCACCGTAGCTGACCTCAAGGTTGAAGCAGCAAATGCTTTCCAAGATGTTTATGTCATGTTCAGAAGACTTCAAATCGAGGAGCTTCTTGGCTATAGTGTTGAGGATTCCTCCTTGGTCCAGCAATTGTCAGGTTCCATGATCCAAGCAGTCCGGCTGCGAGGAAGATGCAACGGCAAGAATGGGTTGAGCAAATTCCAAATGGAACGGGGCATCGAGAGGTGGACCGTGGAATGCAGCTGCGGGGCCAAGGACGACGATGGAGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGAGACACACAAGGTGTTCTGGCATTCACGATGCAGATCCCGTGCCCGCACAGTTTGTTTGTCCAAGATGCCAGAACTCTGACCCCAAGCCCAAATCTAATGGACCCTGCGAGGATGAGATTGTGATTGATATTGCCAAGAATTGCTTTGAGAACAGCTTGCTAGTGCCATCTGATGTTCGTTGA 1701 0.4656 MCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGHGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKFGVEYRLLNAITKGHPWYGDWGYQFGSGSYGLTHESYKSAVEFLSNLPLSTFLAQGQKCDSRVQGMISYYQSLSKKELVNIRGFLCFLMDLIHDARKTAASNIDDITCKKRRLNVTGVSSSWTKSDIECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGATVNTRCNPVTGAFEYRLEAGDNSRYGFATNISSGLKNPSEVTLLHDLRYFYNSILNPQTMLNYDPEETRVIAMSSAQKLLDCKQFVKDYKPEMMPLSNLSKIRLSCQLELEDESDDFAAHLPPELVILPGNATVADLKVEAANAFQDVYVMFRRLQIEELLGYSVEDSSLVQQLSGSMIQAVRLRGRCNGKNGLSKFQMERGIERWTVECSCGAKDDDGERMLACDICGVWRHTRCSGIHDADPVPAQFVCPRCQNSDPKPKSNGPCEDEIVIDIAKNCFENSLLVPSDVR 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g1520 566 SUPERFAMILY FYVE/PHD zinc finger 474 533 IPR011011 -
Prci1g1520 566 Pfam PHD-finger 485 531 IPR019787 -
Prci1g1520 566 SMART PHD_3 484 530 IPR001965 -
Prci1g1520 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 535 IPR013083 -
Prci1g1520 566 CDD PHD_MMD1_like 484 529 - -
Prci1g1520 566 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 540 - -
Prci1g1520 566 ProSiteProfiles Zinc finger PHD-type profile. 482 532 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g1520 Prci-Chr1 34257079 34261317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g1520 32 529 PHD Transcription Factor Family AT5G22260 30.871 1.12e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g1520 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g1520 K26271 - gmx:100818189 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g1520 1 34257079 34261317 Prci1g1520 1 34257079 34261317 ECH